RNA id: TU380430


Basic Information

Item Value
RNA id TU380430
length 600
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G321253
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16129201 ~ 16129800 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgTGTATCAGGGAAACAGCCTCAGCCATGGAATGTCTCTTGTAATAATGAAAGCACTGGGACATTACACACAGTCAgactacatgtttttttttttggatgccTACTTGCATTCTTACACAGCATGAATGAAATACTTCATGTAGTTACCGTCTGTTTCTAGTGGTCTACTCTGGAGTCACCAAAATTAAAcacaagtagaaaaaaaaatactcaggtcttaaaagaaaaaaaaaattaagaatacCATACCCTTACATTTTcatatgtaataaatacaaagaaTTTAAAAGCAACTGTCTATAcacataaaataacacaaagcaCATATCTGTAACAACAAGctataaattaaatgcattataaaaatgtaatttcttgTACTCTAATACTGCaaacaatattttattgcactaaaaataaaacagaaatattaacgcaaataatacatatacagtacaactATTATAACACGTTATTCCAACATTATTTCAAGTTTTTGTTGAATACTCTTATGAAAGGAATTACATATAAACTGCCAGCttacaaaatacagaaaaatatggAGGAAAAGATTTCCTAACATGTCCAAGATTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380423 lncRNA upstream 30200 16098615 ~ 16099001 (+) True G321247
TU380422 lncRNA upstream 31810 16096253 ~ 16097391 (+) True G321246
TU380421 lncRNA upstream 32972 16095903 ~ 16096229 (+) True G321245
TU380416 lncRNA upstream 35377 16091596 ~ 16093824 (+) True G321241
TU380414 lncRNA upstream 38802 16089606 ~ 16090399 (+) True G321239
TU380431 lncRNA downstream 149 16129949 ~ 16130269 (+) True G321254
TU380432 lncRNA downstream 622 16130422 ~ 16130684 (+) True G321255
TU380433 lncRNA downstream 930 16130730 ~ 16131005 (+) True G321256
TU380437 lncRNA downstream 5524 16135324 ~ 16137604 (+) True G321258
XR_004580325.1 lncRNA downstream 55820 16185620 ~ 16187003 (+) True LOC117599979
XM_026925606.2 mRNA upstream 9168 16112035 ~ 16120033 (+) False si:ch211-178n15.1
XM_034314867.1 mRNA upstream 11856 16112036 ~ 16117345 (+) True si:ch211-178n15.1
XM_026925364.2 mRNA upstream 26759 16100533 ~ 16102442 (+) True jund
XM_026925672.2 mRNA upstream 87463 16039835 ~ 16041738 (+) True uba52
XM_034314914.1 mRNA upstream 91021 16028370 ~ 16038180 (+) True cers4b
XM_026925885.2 mRNA downstream 32654 16162454 ~ 16167346 (+) True cplx4c
XM_026925384.2 mRNA downstream 44770 16174570 ~ 16180499 (+) True rx2
XM_026925383.2 mRNA downstream 58189 16187989 ~ 16193122 (+) True calr3b
XM_026925167.2 mRNA downstream 67124 16196924 ~ 16223330 (+) True eps15l1b
XM_026925172.2 mRNA downstream 67124 16196924 ~ 16223330 (+) False eps15l1b
XR_003403417.2 other upstream 9168 16112036 ~ 16120033 (+) False si:ch211-178n15.1
XR_004580319.1 other upstream 18112 16100533 ~ 16111089 (+) False jund
TU380359 other upstream 192433 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 258206 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1300430 14827265 ~ 14828771 (+) False ly97.3
TU380434 other downstream 1535 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 54272 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 55697 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_20 other downstream 57171 16186971 ~ 16187041 (+) True trnag-gcc_20
TU380835 other downstream 721645 16851445 ~ 16852424 (+) False LOC117599970

Expression Profile