RNA id: XM_034297703.1


Basic Information

Item Value
RNA id XM_034297703.1
length 1228
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC113543381
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7941078 ~ 7953336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtgtctgtctttctgaatCTCTGCATCTTTTTCCTGTAGtgaTGACTAAATTTAAACTAAATCATTGGGTCACCATGAGAATCAGCATTGCCATAGTAACTCTGCTGCCTATATGCACAACAGTACCAAAACACAGTCAGTGGCAAAGAGAAATTCTAGCTTCAACAGAAATTCCTGTAGAACACATTGACCCTGGTTCCATTGACCTGACTCCATTAATAAACACACTCCTTAATGCTTCACATGCAGGTTCTGAGCATTTGCTCTCTGTTCtgagtgtgacatcacacagCTCTCTTGCACTGCACAAAATCACCCTGCTGGTCTACAACAtctctaGTTTTCAGGACATTGAGACCGGTATGTTTCCCCTGAGATACTGCTACTGTGTGACAAACAAAACCAATGACCTCACAGattTTACAGCCATATTGCTGGATGTAATGGGGAACTCAACTAGCTACCTGCAGGAGCTGTTTAAATCTAGCTCTATTCTCTCAGTTGGCCAGATGAAGAGCTCAGACTGTATCTACATCTGTGTAATGGCTGGAAAAACAGACAAAGAACAGAACGAGCTGTGGGATTCTGTTCCTCCACTGTTCAACCAGACCAttatagagcacacacacacaggtacaaagTGCTGCTCTGATTTGAGTGCAGACAGGATGGTGGTAGTGATAGTACCCACGGCAATGCTGTCAGATACCCCTGGAGAGAAGTCTAAGTGGCAGGGTTGTCCATGGCGATCTGAGCTTTTCTATAGAGGAAGTCAGAGAAAGGACCAGAAAGAAACTCTGGATGAGGCCCTGAGTGCGAACAGTCCGACAATCAGCACAATTAAGCTGCAGccatgtgtgtttgagctgtgcAAGTTTTTCTCCCTGTGCCTTTGCAGAGGTTTAAGTCAGAAAACTAGTCTGCAGAGGTACTGCATAGACAGTCATTTTTGGTATGAAAAGCACACAGTGGAGGTGTGCAGTCGTGTGAAAAGAGTCACCTTCTCCAAGAGTCTGAAGCAGAAGTGCCTGGCAAAGATGTGTGTTAAAATGTGAGAAGAGCATGATGTTCCTGCAAGACTGTTACCGAGCAACAGACCAAATCCCTGAACTCTTTCACCTCtgaaaggaagagaaaatgagagagagagagagagagagagagagagagagcagtgtgcGAAACTGTATTTTTGCAGTACTACATATTGGTAGCAGTatataacc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374778 lncRNA upstream 184124 7756763 ~ 7756954 (+) False fitm1
TU374758 lncRNA upstream 211341 7703722 ~ 7729737 (+) False G316419
TU375004 lncRNA downstream 91157 8044493 ~ 8044697 (+) True G316630
TU375122 lncRNA downstream 305493 8258829 ~ 8259070 (+) True G316741
TU375123 lncRNA downstream 305922 8259258 ~ 8261708 (+) False LOC113543009
TU375124 lncRNA downstream 305922 8259258 ~ 8261631 (+) False LOC113543009
TU375125 lncRNA downstream 305922 8259258 ~ 8261708 (+) False LOC113543009
XM_034297738.1 mRNA upstream 5985 7883895 ~ 7935093 (+) True kcnq3
XM_026941259.2 mRNA upstream 5985 7883895 ~ 7935093 (+) False kcnq3
XM_034297739.1 mRNA upstream 5985 7883895 ~ 7935093 (+) False kcnq3
XM_026941263.2 mRNA upstream 59361 7859024 ~ 7881717 (+) True lrrc6
XM_026941267.2 mRNA upstream 184117 7751694 ~ 7756961 (+) True fitm1
XM_034314657.1 mRNA downstream 3707 7957043 ~ 7973996 (+) True oc90
XM_026941417.2 mRNA downstream 117229 8070565 ~ 8130482 (+) True adcy8
XM_026941416.2 mRNA downstream 118096 8071432 ~ 8130482 (+) False adcy8
XM_026941173.2 mRNA downstream 240419 8193755 ~ 8257661 (+) True myo10
XM_034314850.1 mRNA downstream 322242 8275578 ~ 8327509 (+) True dip2cb
TU374748 other upstream 245159 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 805577 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 996470 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1713838 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 2044248 5894504 ~ 5896830 (+) False shox2
TU375134 other downstream 310003 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 315373 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 858621 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1458987 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 2005993 9959329 ~ 9977901 (+) False pip4p1a

Expression Profile