RNA id: XM_026941173.2


Basic Information

Item Value
RNA id XM_026941173.2
length 7354
RNA type mRNA
GC content 0.51
exon number 42
gene id myo10
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8193755 ~ 8257661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaGTCACCGCGAGCTTGCAGCCTGGCTGTAGACGGAGCCCTCGCTGTTTACCGATGCGCGCGCCGCCACGCCGCACAGAGTGACCTCGCGCGCACAGTGGACGCGGATCCCCGGAATTCCAGCGCACGTGAACTCTGCTGTTGTCTCGGGAGACTCGCGAACATCTGTAACCTCTGAAACAAAGAAGACGCgcgtgcgtctgtgtgtgtgtgtgtgtgggaaacagggagagagagagagagagagagagagaggagactgCGAGCTGGAAGTTGAGCCTCTGAAATGGAGTGAGGATTTACCAGCTGTAATTCCAGCCCTGAGACTGAAGTCCGCCTGCTCTCCTGGCACTAACCAGGACCATGGATAACTTTTTTACAGAGggTTCTCGTGTGTGGCTCTGGGAGGAGGATCAGTATTGGGCCAGCACCGTGGACTCCTGCTCAGGAGGCATTGTGGTTTTCCGCACCGACTATGGACAGgtgtacACCTATAAGCAGAATGCTTTGAGCAGGCAGAGAGTGTATGAGATGCAcagtagcagtgtgtgtggtgtggaggACATGGCAGCGCTGCAGGACCTCCATGAGGGAGCTATCCTACACAACCTGCACCTGAGATACACACAGCGCAGTATATACACGTATATAGGGTCTATATTAGCAGCAGTGAACCCGTACCAGCAGTTGCCGGAGCTTTACAATGTGTCGGCGGTGGAGAGCTACAGTCGACATCACCTGGGGGAAATCCCGCCTCACATCTACGCCATCGCCAATGAGTGCTACCGCTCGCTCTGGAAACGCAACAACAATCAGTGTGTGCTCATTAGtgGGGAGAGTGGTGCAGGTAAGACGGAGAGTACCAAGGTGATTCTGCGGTTCTTGTCTTTAATGAGTCAGCAGAGCCTAGAACTTTCCGCAAGACACACAACATCCCACGTGGAGGAGGCGCTCCTGGAGAGCAgTCCTATAATGGAGGCATTTGGAAATGCTAAGACGGTGTATAATAATAACTCCAGCCGCTTCGGGAAGTTCATCCAGCTTCACTTTAGCCAGCGGGGAAACATTCAGGGAGGAAAGATTGTGGACTACTTATTAGAGAAGAATCGTGTTGTGCGGCAGAATCCCGGCGAGAGGAACTACCATATATTCTACGCTTTACTGGCAGGAAGCAGTGCAGAACAGAGGGaGGAGTTTTCTCTGCTGCCCGCTGAGAGTTTTCATTACCTGAATCAGTCTGGCTGTGTGAGGGATCACACcatcagtgacacacacacatttcaggaaGTGCTGaatgCCTTGCGGACCATGCACTTTGGGGAGGAGAGTATCTGTGAGGTTATGAGGCTTTTAGCTGGAATTCTGCACCTTGGGAACATTGAATTCGCCACAGCCGGAGGAGCTCAGGTCTCCTCCAAAGCAGctCTCAGCAGTGCAGCGGAACTGTTGGGTTTGGACTGCACACAGCTGGCTGAAGTTCTGACACACAGATCCATGATCCTTCGAGGAGAAGAGATCAGCACTCCACTTACTGTAGAACAGGCTGTCGACTCTCGAGACTCTATGGCTATGGCTCTCTACTCTCAGTGCTTCACCTGGATCATCCACAAACTCAACAAGCGTATCCACGGCAACGACAACTTCAAGTCCATTGGCATCCTGGACATTTTTGGCTTTGAGAACTTTGAGGTGAATCGGTTTGAGCAGTTCAACATTAACTACGCCAATGAGAAGCTGCAGGAGTATTTCAATAAGCACATCTTCTCCCTGGAGCAGCTGGAGTACAACAGggaaggACTCATCTGGGATGATGTTAACTGGATGGACAATGGAGAATGTCTGGATCTCATAGAGAAGAAACTGGGTTTGTTGGCTCTGATGAATGAAGAAAGTCATTTTCCCAAAGCCACTGATGCTACGTTGCTGGAGAAGCTCCACAGCCAACACTCTAAAAACCCTTTCTACACAAAGCCTCGAGTTGCTGTGCACTTCTTTGGAGTGAAGCACTATGCAGGAGAGGTGGTGTATGACGTGAGAGGGATCctggagaaaaacagagataCTTTCAGAGATGACATCCTCAACTTACTCAGGgatagcagcTTGGATTTTGTGTATGATCTGTTTGAGAGGATGAGTAGCAGGTGTGGGCAGGACATGATGAAAAGCAGCTCACAGCACCGCAGGCCAACAGTCAGCTCCCAGTTTAAGAATTCTTTGCACTCCCTGATGTCCACCCTCAGCACCTCCAACCCTTTCTTTGTGCGCTGCATCAAACCCAACAACAAcaagaTGCCAGATCGTTTTGATCACTCTGTGGTGCTGAACCAGTTGCGGTATTCTGGCATGCTGGAGACAGTGAGGATCCGGCGTGCTGGCTTTCCTGTTCGGAGAACCTTCCAGGATTTCTGCACCAGgtaCTACGTGTTAATGAGAGGTGTGGCCAGGTGTGATGACCCCAAGGAGGCGTGTCTGCAGGTGCTCCGCCTCTACGACAGCAGTAGTGCAGAATGGCAGCTGGGAAAGACGAGGGTTTTCCTAAGGGAGAGTCTGGAGCTGCGATTGGAAAAGAAGCGAGAGGAAGAAGTGCTTCAGGCTGCAGCCATTATACAGGCCTACCTGCTGGGATACAGGGCacgGAGGCAGTACAAGCGgctgctgcagtgtgtgctgGTGATCCAGAAAAACTGGAGGGCACTTTTCTGGCGCAGGCGCTACTTGATGCTTCGCTGGGCCTCCATCACACTCCAAAAAAGAGTTAGAGGTCAAAGGGCACGGCAGCTCTACACACAGCTACttgaggagaggaaaagaagggTGGAGGAGGAGCGGAGAcaaagagaagaggaggaggagcgagAGAGagagagacagagactggaGATGGAGCGGAAGGCTCGAGAGGCAGAAGAGGCACTGAGAGTAGAGGAGGCTCTgagaattgagagagagaggaagattcTCAGAAATGGTCTGGAGCAAACATCTGTTTTGGCTGAGAGCAAGCGCTCAGAGCAGCCATTATTGGATGAGGTTTTTGAGGAAGAAGCCCGTCCCAATGAGGCTTCACAAGTGGAGGAAATCCTGCGTCTGGAGCGTGAAATTGAGGGTCTGCGGAGGCAGAAAGAGACACGGGAGCAGACTCTGACGGCACATTCTCTGGCACGTCTGCAGCACCTGCGTGATCAGGAGTTGCTCAGGCTGGAGGAAGAGGCCTGCAAGGCAGCGCAGCAGTTCCTCTCCTCGCTCAACTTCCACGAGATCGATGAGTGTGTGCGCAACATCGAGAGCACCTTAGTGTTGCAGGATTGCTCAGAAGAAACTGAacaagagaggaggagaggtggggatgaggaggaggtggaTGAAGGATTGGGAGGGGATGAGGAAGGCTTTAAAGATTCACCGAACCCCAGTGAGCACGGCCACTCGGACGGCCAGCGCACCAGTGGGATCCGCACCAGTGACGACTCGTCTGAGGAGGACCCGTACGCCAATGACCGCGTGGCTCCACCCCCAGCACCACCCACAACTGTGCCCTCAGCCTATCATGCACTAGCCTGTATCAGGGACACCACCTACTGTGGGGCGCAGCAGGAAGAGGACCTGATCCCACCAGATGAAGACTCCGATTACGACGCCGATGAGTATGATGAAGGCGGCATTGTCCTGCCTCCCAGCATGTCCCTGTCTGTGCTCCAGACTGGCagctggtcacatgaccagcgCAGCTCCATGGCGACAAGCACCAGTGCTAGCTCGGGGGCGTACAGGTTCAGCTCTGAGGGAGCCCAATCATCATTTGATGACAGTGAGGATGACTTTGACAGGTTTGATACGGATGACGAGTCGTCTTATCGTAGAGATTCTGTCTACAGCTGTGTCACTCTGCCTTACTTTCACAGCTTCCTCTATATCAAAGGTGGGCTGCTGAACTCATGGAAGCGCCGCTGGTGTGTGCTGAAGGACGAGACGTTCCTGTGGTTTCGGAGCAGACAGGAGGCTCTGAAGCAGGGCTGGCTGCTTAAGAAGGGTGGAGGCTTATCAACTCTCTCTCGCCGCAACTGGAAACGCCGCTGGTTTGTCCTACGCCAGAGCAAACTTATCTATTACGACAACGATGCTGAGGAGAGGATGAAGGGCATGCTGGACATGCATGAAGCGAAAGAGGTCATTGATAACACAGGCAAGGAGAATGGAATAGATATTGTGATGCCAGAGAGAACATATCATCTTATAGCGGATAATGCAGAGGATGCCagCCActggttcagtgtgttgagtcaGGTACACACTTCCACCGAGCAGGAAATCAGAGAGATGCATGACGAACAGGCCAACCCACAGAACGCTGTGGGCACATTAGATGTAGGCATGATCGACTCTGTGTGTGCCTCAGACAACCCAgagagGCCAAACTCGTTTGTGATCATCACAGCTCACCGTGTCCTGCACTGTAATGCTGAGACCCCAGAGGAGATGCACCACTGGATCGCCCTCCTGCAGCGCTCTAAGGGAGACACTCGAGTCCAGGGCCAAGAATTCATTATTCGAGGCTGGTTACATAAAGAGATGAAGGGCAGTAGCCGTAATAACCTGAGACTAAAGAAACGCTGGTTCCTGCTTACCCATAATTCACTGGACTACTATAAGAGTTCAGAAAGAAACGCGCTCAAACTGGGCTCTCTGCTGCTAAACAGCCTGTGTTCTGTACTGCCACCTGACGAGAGAGTGTACAAAGAGACTGgttacTGGGGTATGACAGTGTTTGGCCGTAAACACTCGTATAGGCTCTACAGTAAGCTGCAAAGTGAAGTGTGCCGCTGGGCCAACGCTGTGCAGAATGTCATCGATAATAAACCACcaatggacacacacacgcagcaacTCATCCAGGACATTAAGGAGAATTGTCTAAACTCCGAAGTGGTGGATCAGATTTACAAGAGGAACCCAATACTGCGCTACACACACCATCCTCTACACACACCGTTACTTCCTCTGCCTTATGGAGACGTCCACCGCAGCTCtgaaagggggcggagctacagCACTTTGCAGGCTGAGGCGCTGAAGCTCTTTTGCACACTTCAGCAGCTTGAGGGCGTGGCCGATCCCGTCCCAGTTATCCAAGGCCTTCTGCAGACAGGTCATGACCTCCGACCCCTGCGAGATGAACTCTACTGTCAACTCATTAAGCAAACTACCCGGCCCCCTGAGCCAGGTGGCCCCGCCCACATCAGTGGCTGGAGAGTCATAGCCTGCATGTGCTGCACATTTAGCCCTATCTCCAGGAGCGTCCTGAAGTACCTCAAATTCCACATCAAAAGGACACGCGAGTTATTCCCAGGCACGGAGATGGAGCAATACGCTGCATTTTCCCAGGAGGCACTGAGGCATGTGCGTGGACGGGAATGTGTGCCATCACATGAGGAACTCAGAGCCATTCTCAgcagacaggaaatgacatcaacTGTATACTGCCATGGAGGTGGATCCTGCAAAATTGCCATCAACTCACACACCACAGCAGGAGAGgtGGTTGATAAGTTGCTAAAGGGTCTGGCTATGGAGGATAGCAGGAATATGTTTGCTCTGTTTGAACACAATGGCAGCACAGACAAAGCCATCGAGAGCCGCACCATAGTGGCCGACGTCCTTGCCAAGTTTGAGAAACTGGCAGGTGGAGAGGACAATCAGGGTGGAGGATGGAAGCTTTATTTCAAGCTGTACTGCTTTACAGACACGGAGAACATCGCTCTGGACAGCGTGGAGTTCGCGTTCATGTTTGAACAGgctCATGAGGCAGTGATTAATGGACAGTATCCTGCTCCTGAGGAAACTCTGCAGTTCCTGGCAGCTCTTCGGCTGCAGCATCTATTTGGAGACTACactacccagaatgcattgccGGACCTGGAGCAAGTGTTCCCTGTGGCACGCCTGCGTGCCCGTATTCAGCGCTTCACCTCCAGCAGCAGTGGCACAGAGAAGAAGCGGGGCAGTTTCCTGGAGGGCACGCTTAGGCGGAGCTTCCGGGGGTCTCTTGGGCGGAGACAGGGAGAGAATTCTGCTGCAATGGAGGCGTGGTTTCAGGATGAGAAGGCGGAATTAAGGAGCTGTTTGGTGGAGAAATGGAGGAAGCTGCAGGGAATGAGTCAGGATAATGCCATGATCAAATACATGAACCTGGTCAGAGAGTGGCAGGGTTACGGGTCTACACTGTTCAACGTAGAGtgtgtggaCGGTGTGTATCCTGCAGAGCTGTGGCTGGGAGTGAGTCGtaagggggtgtgtgtgtataagcagGGAGAGGCTTGGCCACTGGAGGTTTTCTCCTATGAGGCCATTCTCTCATTCGGTGCTCCACATTCCAACATTTACAAGATCAGTGTGGAGGGAAGAGACCTGTTCTTCCAAACTAGCCAGGTGATGGACATTGCTAAACTGATGAAAGCCTACATCAGCATGATTGTACAGAAGCGTTTCAGCACCTGTCCATCAATCAGTAGCCATGGCACACACTGCAGCAAATGGTGAAGTCTGACCTGCTGCGACCTTTCAGCTCTGAATTacgaacacacactctgttacaTGGAGAGATGTGAATAGTGGGACCTGGCTGAGGTTGTAGGTTATTCTTATTAAAACATTCCCAGGTTAAAGCCAAACCATTCAAGCCTTATTAAGCACTCAGTAGACACTCTGTAAAGCAGCAAGGTAATAATCACCGTGTTCTGAGGAGTGCTGTGTAAATCATGAAAAAGGACATTCACCCGAACGTGCCTAAAACCACTCTGCAGgataaatgtctttttataaAATCCTGACACACATTGCAGTATGAACCTCTTCAGCGTAATCAGTGCCATCTGAATTTCAGAAGCAGGTCTGTAGCCAATATTACCAAAAGTGTTCTGGAGACGCTGTGTGAGCGTTTAGGGTTTTATCCAATAGCGTTTCACTGGAGCTCTGCAGGCAGAACCTCCAGCCAAAGAGACTGTGCCTTTTTTGCaagtgcgtgcacacacacacacacacacacacagtccctgTATGTACAGTCACACTCAGCAAACACATACTTATCCTCAGTGCCGCTCTTAAATGTGTATGACTTTAATGTGCAATGTTTTGTCTTATACTGAAAaagttgtatatttttaaatctttttgttacaaaatgctCATGTCAGGAGgctgccactttttttttaaaagtaatttttattCAAAAGTACTTTTGCCATGTCATGTTATTTAGATTCCCAGAATCTTAAGAAACACCAGCAATATGCAACTTTTTTGACATTCCTGTGTAATATCGGTGGTAGATAATAAAAGGACCAATAAAA

Function

GO: NA

KEGG:

id description
K12559 MYO10; myosin X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375004 lncRNA upstream 149058 8044493 ~ 8044697 (+) True G316630
TU374778 lncRNA upstream 436801 7756763 ~ 7756954 (+) False fitm1
TU374761 lncRNA upstream 464018 7703722 ~ 7729737 (+) False G316419
TU375122 lncRNA downstream 1168 8258829 ~ 8259070 (+) True G316741
TU375123 lncRNA downstream 1597 8259258 ~ 8261708 (+) False LOC113543009
TU375124 lncRNA downstream 1597 8259258 ~ 8261631 (+) False LOC113543009
TU375125 lncRNA downstream 1597 8259258 ~ 8261708 (+) False LOC113543009
TU375127 lncRNA downstream 1597 8259258 ~ 8261631 (+) False LOC113543009
XM_026941417.2 mRNA upstream 63273 8070565 ~ 8130482 (+) True adcy8
XM_026941416.2 mRNA upstream 63273 8071432 ~ 8130482 (+) False adcy8
XM_034314657.1 mRNA upstream 219759 7957043 ~ 7973996 (+) True oc90
XM_034297703.1 mRNA upstream 240419 7941078 ~ 7953336 (+) True LOC113543381
XM_034297738.1 mRNA upstream 258662 7883895 ~ 7935093 (+) True kcnq3
XM_034314850.1 mRNA downstream 17917 8275578 ~ 8327509 (+) True dip2cb
XM_026941045.2 mRNA downstream 77163 8334824 ~ 8379466 (+) True esyt2a
XM_026941046.2 mRNA downstream 77166 8334827 ~ 8379466 (+) False esyt2a
XM_034314688.1 mRNA downstream 77167 8334828 ~ 8379466 (+) False esyt2a
XM_026941385.2 mRNA downstream 128851 8386512 ~ 8422245 (+) False slco5a1b
TU374748 other upstream 497836 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1058254 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1249147 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1966515 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 2296925 5894504 ~ 5896830 (+) False shox2
TU375134 other downstream 5678 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 11048 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 554296 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1154662 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1701668 9959329 ~ 9977901 (+) False pip4p1a

Expression Profile