RNA id: XM_034314688.1


Basic Information

Item Value
RNA id XM_034314688.1
length 3895
RNA type mRNA
GC content 0.44
exon number 23
gene id esyt2a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8334824 ~ 8379466 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTCACAGCTCTGTTTTTGTGTAACGAGAAGAGGTTGGTCCTTTAACATGTCgtttgggtgtgtgtctgtgcccGTACTGTGTGCGTGTCTGTTCACTGGCCTGTGGCAGGATGTGGAGAGACGCTACACTACCGCACGCGACCGGAGTGCGACGCCATGCTGCTAGAGCTCGCGCTTCCGTGCGAAACGCAGATGTGTAGGTTCATTTTCCTGATGTGGAGAGAGTGGAATGGCTCAATAAGACAATTCATCAGATGTGGCCATATATTTGTCAGTTTGTTGACAAACTCTTCCGTGAGACCATCGAACCAGCCATCAAAGGAGCCAATGCACACCTCAGCTCTTTCTGCTTCTCCAAGATTGACATGGGGGACAAGGCCCTGAGAGTGAATGGAGTAAAGGTTTACACTGAGAATGTAGACAAACGACAGATTATCATGGACCTACAAATCAGcTTTGTTGGGAACACGGAGATCGATGTGGAGATTAAGAAATACTACTGCCGAGCAGGCATCAACAGCATCCAGCTGCATGGGGTGTTGAGAGTCATCATGGAGCCGTTGCTGGGAGACATGCCTCTGATTGGAGCACTGTCTGTTTTCTTCCTCAAAAAACCTctgttggATATTAACTGGACAGGTCTGACTAACATGCTTGACATCCCAGGACTGAAaggactgtgtgatggtgtgattgAAGACATTATTTGCAGTTACTTGGTGCTTCCCCAGAAAATCACCATTCCACTGGTGGGAGAAGCACTACTGGCCATATTACGCTTCCCAATGCCAAAGGGTGTTTTACGAGTGCATTTTCTAGAAGGCCAGGATCTGTTGGCTAAAGACACATATCTGGGTGGTCTGATCAAAGGGAAGTCTGATCCATACGGCGTCATTAAGATTGGTAATCAGCTCTTCCAGAGCAAGGTCATCAAGGACTGCCTGCATCCCAAATGGAATGAAGTATATGAGgcatTGGTGTATGATTTGCCAGGACATGCTTTGGAAATTGAGCTGTTTGATGAAGACCCTGATGAAGATGACTTCCTCGGCAGGCTTGTGATTGATCTGAATGAGCTTGAGAAGGAGCAGAAAGTTgatgagtggTTTGTGCTTGATGAGGTGGCAACAGGAAAACTACACTTAAAACTAGAGTGGCTCTCGCCTCTGGCCACACCAGAGAAGCTGGACCAGGTGTTGAGCAGTATTAGGGCAGATAAAGGCCAGGCAAATGATGGGCTCTCCTCTGCACTACTGCTTGTACACCTGGACTCAGCCAAGAACCTGCCTAGTGTGTTTGAAGGCAATCTGTCCAGTGGCTGTCTGAAGGAGCGTCGCTCTGCTGGGTTCGTGTTCTGTGAGAACACGGCAACACTATACAGGACTCTGTTTTCTGCGAAGAAAGTCACCAGTGATCCCAGTCCCTTGGTCCAGTTTAAAGTTGGACACAAGGTTTTTGAGAGTAAGACACGTTATAAAACCAATGAGCCTGTTTGGGAGGAGGCCTTCACATTCCTAATACATAACCCAAAGACTCAGGACCTAGAAGTGgagGTAAAGGACGAGAGGCATGAGTGTACGTTGGGGACTTTTACTCTCCCATTGACTCAGCTGCTGCAGGCTGAGCAGATGACCCTCAGTCAGAGATTTCCACTGAAGAGTGCAGGACCCAGTGCTACTCTCAAAATGAAGATTGCTCTAAGGGTTCTTAGTTTGGAGAAGTTGTCAGTTTCAGACCAGCCGTCATCTGTGCAGGTTCGCAGTCGAAGTTCCAGTGTCATTCCCAGTGCATCAAATTCCAGTCTTGCCCAAAATGCCTCAAGTTCGAAGAACACCCCCAAAACCTCAGGTTCTGTTGTCAGCTCCAAGCCTTCTTCACAGCTCCCACTTGTTTCTGAACATCAGTCTGTCCCTGACCTCCAAGGGTTGAGTGAGTCCATCTCTAACACCCCATTGGAGGACTCACCGGTTCGTCTAGCAGATACAGGCAGGAGTACATCTAACTTGGCGATTTCAGGCTCTCGGATGAACCTGAACAACAAAGAGCCAACACCAAGCATTGCCTCTGACATCTCTCATCCATATGCTTCCCAGGAGCTACAGAACAGGCTTAAAGAGCTACAAAATGGGTCCACATCTGGTCATTTTCCCCTGGGAGAAATTGAGCTGACAATAAGACACAGTGCCCAACGGAACAAACTTATAGTAGTGGTACACCGCTGCAGGAATCTGATATCATTCACAGACAGCGGTTCTGATCCCTACGTGCGTTTGTATCTACTCCCGGATAAGCGGCGATCTGGACgtagaaaaacacacatgatCAAGAAAAACCTCAACCCAGTCTACGACCAAACATTTGAGTTCAGTGTGTCACTGGTGGAGTTGCACAGGAGAACTTTGGATGTAGCAGTGAAAAATGGAGGAGGTCTTCTGTCTAAACACAAGGGTCTTCTGGGCAagGCGATGGTGGATTTGACATCAGAGGACATATCAAAGAGCTGGACACAGTGGTATGAACTGAGTGAGAATGGACTGAGAAAACCATCTGTTTAATCAGAACACTCAGTTTCCTTCTGCTGGCCAAAAATCAGGACTCCCTGCATGGAATCCCTACACAGACTACAAATGTCAGCCATGTTTAAGTGTTGTAATTTTAGTGGATGGactttttctatatatataatatgtataataataattttaatcaagatcatttttatttagatgacCTGCCAAAAGAATATAATGCTTTGGATTTAACGTGCAGCTGCTGAGGTTGCTTTATGGTCTCATGGTTTAATTTGTGCAATAGGAagaagatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaggaaAGATTCAGTAATGGAAAATGGATAAATTACAAGtcaaataaacatacataatatGACATTTTTACCAGAAGTCAcagtcaggtgtgtgtttatattcatgcaTAAGTGTGTTTAGTCCTAAACTAATTATGTACGTATACTGTGTACAAGTATGATATTTTGCacttgtgaatgtgtttgtgtgcattggGTTTGGGGAGACAGATGGGAATTTACATGTTACacaaggtttttttgtttgtttgtttgtttgttttgttttttaatacttACCATGGTGTATATGCTCACTGCTCACTTGCAAATGCCTTTAGAAAATACTGTAAGGCTGTATAGATGCAAACCAAAGCATAGTCTCTCCTGCTGGTTACTGCTGTCCCTTTAAGTCCTCTGAACTGAACTTTGTAGCAGACAGGGACACAttctaattttgtttttattaattgtttttattaataaggGAGTTCATCAGTAAGAATTACTAAGTAGAGTGAAGTACTTGCAAAATGCTTTTGACATGCTCCTTTGTGATGAGCTTTCCTTTCAGGGTTGTAtgattgtatatgtatatacttttCATGTGCCTTAGCCCTGCTTGGGTTTATCAAGGGCAACTGCATGCCCCTGCACatttgtgacatcacaacacATATTCATGAAGTAAATATTACTGTAAGCcatatttttaacaataattGAGTAGGCTATAAAAAGGCAACACACGGTCATCTGATGCATGGTTTGATAGATAAATAATGCACACCAGTACGTAGGCAAAACAACACTTTATCACACCTAAACTGAAAGATAAAAGGTCAGTGGCAGTGCCTTTTTGCCAGTTTCATGATATTGTTTATACGCACCAAATCTAGTTCTAGTTGCCATCTCATTAGCACAGAAATTAGCATTAACGCTTAGTTGGAAAGCTAGcagaaaattacacaaaattagCCTGATTCTGCAGACAGGTGGCTCTTACTGAAGCATTATTGAGAGACTGCGACTCAATAAACTTAAAACCATTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375144 lncRNA upstream 1297 8332424 ~ 8333531 (+) True G316754
TU375142 lncRNA upstream 3042 8331506 ~ 8331786 (+) True G316752
XR_004580332.1 lncRNA upstream 73116 8260724 ~ 8261712 (+) False LOC113543009
TU375132 lncRNA upstream 73120 8259258 ~ 8261708 (+) True LOC113543009
TU375129 lncRNA upstream 73197 8259258 ~ 8261631 (+) False LOC113543009
TU375442 lncRNA downstream 208529 8587995 ~ 8588211 (+) True G317008
TU375461 lncRNA downstream 281820 8661286 ~ 8661776 (+) True G317027
TU375465 lncRNA downstream 309969 8689435 ~ 8691471 (+) True G317031
TU375493 lncRNA downstream 346875 8726341 ~ 8730818 (+) True G317045
TU375589 lncRNA downstream 414248 8793714 ~ 8793944 (+) True G317113
XM_034314850.1 mRNA upstream 7319 8275578 ~ 8327509 (+) True dip2cb
XM_026941173.2 mRNA upstream 77167 8193755 ~ 8257661 (+) True myo10
XM_026941417.2 mRNA upstream 204346 8070565 ~ 8130482 (+) True adcy8
XM_026941416.2 mRNA upstream 204346 8071432 ~ 8130482 (+) False adcy8
XM_034314657.1 mRNA upstream 360832 7957043 ~ 7973996 (+) True oc90
XM_026941385.2 mRNA downstream 7046 8386512 ~ 8422245 (+) False slco5a1b
XM_026941384.2 mRNA downstream 7047 8386513 ~ 8422245 (+) True slco5a1b
XM_026941191.2 mRNA downstream 48353 8427819 ~ 8432247 (+) False lactb2
XM_026941192.2 mRNA downstream 48661 8428127 ~ 8432247 (+) True lactb2
XM_026941189.2 mRNA downstream 57915 8437381 ~ 8462127 (+) True slco5a1a
TU375135 other upstream 65630 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 70767 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 638909 7695534 ~ 7695919 (+) True G316413
TU374286 other upstream 1199327 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 1390220 6937340 ~ 6944608 (+) False LOC113543138
TU375607 other downstream 432491 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1032857 9412323 ~ 9415164 (+) True G317390
TU376185 other downstream 1579863 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 1808285 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 2156965 10536431 ~ 10562994 (+) False capn10

Expression Profile