RNA id: XM_034314653.1


Basic Information

Item Value
RNA id XM_034314653.1
length 5369
RNA type mRNA
GC content 0.50
exon number 41
gene id brwd1
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7466633 ~ 7490001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCAAGCgcgagacaaaaaaaaatcttttcgtTACGAAGCCGCTAAACAGAATAGCTTTTCGACGCCTATAAGCGagtaaacacagaaaaaaaaactgtcgaTATGGTTTTAATTTGTCAGTGACATTTCTACTTCCTTTGTTTGACAGGGAgactttttttctcccccaacCCCCCATTTCCTTTGGTCGGAGCGGAAGTTGTTCTGTAAGCCGAGGCCTCGCACTTCCAATGGCGACTGAAAACTGGCTGAACGGAAAGCGGGAGCTATCACGAAGGAGACCCGAACCGTGCagtcagaattaaataaatatatcagcGGATAACAAGACATAGAAAGAAGTTTCAAGAGGAGTACGTCAGCTAAGTTATGGCTGACAGAATGGACAAAAGAGGGAGTATTTCGCTCCTTGAATCGGagCTTTATTATCTAATTTCTCGCTTTTTAACCACCGGTCCTTGTCAGAGAGCGGCCGAGGTTCTCGTGAGTGAACTGGAGGAACATCagCTCCTTCCCCGTAGAGTGGACTGGGAAGGAAATGAACATCCCAGATCATATGAAGACTTGATCACCGCCAACAAACATATTGCACCAGACCACTTGCTGCAGATATGTAAGCAGATCGGTCCAATCCTTGACAAGCAGGTGCCGTCTGGTTTGCCTGGGGTGCATTCTCTACTGGGAACAGGGAGACACTCCTTACTTCGTACAGCTAAAGATTGTGGCCGTAGCCGATGGAAAAGCTCAACTTTTGCTGCACTTCATCGAGGAAGACCACCGGAGAGGCCTCTGAGCTGCAGGGATGCCCCAAATCTGGTGGAGGTGTGCAGAGGCAGGGAGTTGACAGGCACTCAGCGTTTCAGCTTTGTCCATCCTGTCAGTGTATATCAGAACATCAAAATGCACAGGAGGATTCTGGGACATCTGTCGGCTGTTTACTGCATTGCCTTCGACCGAACAGGATCCAGGATTTTCACGGGTTCAGATGATGCCTTGGTAAAAATTTGGTCCTCTTTTGACGGGAGGCTCCACTCCACTCTGCGAGGACACCATGCTGAGATCTCAGACCTCGCTGTCAACTTGGAGAACACCCTCATTGCAGCAGGGAGCTGCGACAAAACCATCCGAGTTTGGTGCCTTCGTACCTGTGCCCCAGTGGCAGTGCtgcagggtcacagtggatctatTACCTCTTTACAGTTTTCTCCATTTGTCAAGGGCTCCAAAAGGTACATGGTCTCTACAGGAACTGATGCAACTGTCTGCTTCTGGCAGTGGGATGTAAATAACACCAGTTTCACTGATCGTCCCCTGAAGTTCACAGAAAGGCCGAGACCTGGTGTTCAGATGGTGTGTTCCTCATTCAGCCCAGGAGGCATGTTCCTAGCCACAGGGAGCACCGATGATGTAATCAGGATATACTACCTGGGCAATGGGAGTCCGGAAAAAATAGCGGAGCTCAATTCACACACAGATAAAGTCGACAGCATCCAGTTCTGCAATACAGGAGAGAGGTTTGTAAGTGGCAGTCGTGACGGCACTGCTCGCATCTGGAGGCTGCATCAGAGACATCAGTGGAGAAGCATTTTGCTGGAGATGTCTGCCACTTTACCAGGAACTGTGCCTGCGGAAGAAGAAAGCTTCTTCAAACCCAAGGTCACCATGGTGTCATGGGATCGTCATGACAACACAGTTATCACTGCTGTCAACAATCATCTCCTCAAAGTGTGGAACTCCTATACAGGGCAACTTCTACATGTGTTgaagGGTCATGAGGCAGAGGTGTTTGTGCTGGAGCCACACCCATATGATCCCCGTGTCATGCTGTCTGCAGGTCATGATGGCAACATTTTCATTTGGGACCTAATACGAGGCACAAAGACTCATCACTACTTTAACATGATTGAGGGGCAGGGGCATGGTGCTGTTTTTGACTGCAAGTTCACCCCTGATGGTCATCGCTTCGCCTGTACAGACTCTCATGGTCACCTGGTCATTTTTGGATTTGGGAGCTCCAAGCCTTATGAAAAGCTTCCAGATCAGGTGTTTTTTCACACTGACTACCGTCCATTGATCCGGGACTCCAACGGGTTCGTGTTAGACGAGCAGACACAACAGGCACCTCACCTCATGCCCCCACCCTTCCTCGTGGATGTCGACGGGAATCCTCATCCTCCTAGATATCAGAGACTTGTGCCAGGGAGGGAGAACTTCACAGATGAGCACCTGGTTCCTCAGCTTGGATACGTTGCTACGAGTGATGGTGAGGTGGTGGAGCAGGTAATCAGCCAGCAGCCAGCTGAGAGTGAGGATCCTCAGGCGCGCCGCAGTCTCTTAGATGACGCCATCCGTCAGCTCCAGGAGCAGCAGGACCAGCAGgctgggaggcagcagggtacCCCTAGAAGAGTGTCTCTGAGTGAGCGGATGGAGGTGCAGTCTCCACCTAACGTGGGGCTCCGGCGCAGCGGGCAAGTGGAGGGAGTGCGGCAGATGCATCAAAACGCACCGCGCAGTCAGATGGCAACAGAAAGGGATCTGCAGGCATGGCGGCGCAGGGTGGTGGTGCCTGAACTTACTGCCAGTGCGTACAGTGATCAGGAGTTATTCAGAATCGCTAAGGGAGACGAGGAGATTGTCCTCTATAATGCCAAGAAACGCAGAATTGCACACGGCACCTTTAGgGATGATTCTGATGATGAGGCGGTGTGCACTAAGCGCACACAGCCACGCAAGCGGCACCGCAATTTGGAGAGCACGAACAGTTATGCAGAGAGTCTGATCGAGTTTTCCTGTGAGGAGGGAGAGGAAACTGCTTCCTCTGAGGAGAATGAAATTGAAGCTAGCGAGGTAGACTCGTCaaatgaagaggaagaggaggaatgGAAAAGTGACAGCTCAAGTCACTCGTCCAGCGAGTATTCTGATTGGACAGCTGATGCTGGCATCACTGCGCAGGCGGCCATGTCCTCCCGAAGACGTGCTCGTAGGCAGATTAGCAGTtctgatgaggaggaggaggaagacaaCACTGCAGAGGATGAGCAAACCGAACAAACACAGGATGAGGATGCACCGTCCTCGTCACCTCAGAAACCgaagagaaaagcaaaaaccaaaacacCAAAGTGTCCAAAACCCAGGCTGTCCCTGAACAGAGAGGTGTCCAACGAGTTTCGTCCCTCTACCTGGATTACTGATGTCATTCCTCGAAAGTCTCCTTTTGTTCCGCAAATGGGAGATGAGGTGATCTACTTCCGTCAGGGTCACGAGGCCTATGTTGATGCAGTGTGCAGGAGTAATTTGTACCCCATCAACCTGGACAAACAGCCATGGAGGAAGATGGATCTGAGAGACCAAGAGTTTGTTAAAATAACTGGGATCAAGTACGAGGTGTGTCCTCCAACACTTTGTTGCTTGAAACTGACGCAGATCGACACAGGAACAGGCAAAATAACAAACAAGTCGTTTTCTGTGAAGTATCATGATATGCCCGATGTGATTGACTTCCTTGTGCTCCGCCAGAGCTATGATGAAGCACGCAGCAGGATCTGGAGGCCAAATGATCATTTCCGGTCAGTAATTGACGATGCTTGGTGGTTTGGGACCATAGTCTGTCAGGAGCCGTATCAGCCTGAGTATCCTGACAGCCATTTCCAATGCTTCAAAGTCAAGTGGGACAATGGAGAAATTGAAAAGCTTAGTCCATGGGACATTGAGGCTATTCCAGAGAATGCTCAGCGTCCAGAGGTGGTGGGTGGATGTGTGCCGGTTACAGATGAAGAAAGAGCTGACATCCTGTACAAACCACAGGAGGACGAGTGGGGAGGGAGGAGTCGAGAAGAAGAGTGCGCACGTATCATTGCCGGCATAGACCAGCTCATCACAGTAGATATTGCTGCACCCTTCTCTGGCCCAGTGGACCTCATTCAATATCCCACTTACTGTACTGTAATCGCCTACCCCACTGACCTGGGCTCCATCCGCATGAGGCTGAAGCACAACTTCTACAGGAGACTATCTGCACTAATTTGGGACACGAGgtatatttatttcaatgcaaAGACCTTCAATGAACCACGTAGCAAGATTGCACACTCAGCAAAATTTATAACAGATGTCCTCTTAAAGTTCATTAGcaagCCACATTGTACTGATGTTATGGAGATTTACAATGCAGTTGAAAACATGGAGTACACTGAGGATGAGGATATGGAAGATGTTGATGCACCAGGCACATCTACTGGGCGGAGGGCACATCAGATGGAGCTGGACAGGGATGCATGGAAGGATGCATGCAAACAGCTGCTGGATTATATGTTTGAGTGTGAAGACTCTGAGCCTTTTCGTCAGCCTGTGGATCAGAATGAGTATCAGGACTATTTAGCAATCATCGACACTCCCATGGATCTGGAGACCGTTCGACGAACCCTTGAAGAAGACCGCTATGAAAACCCCACTGAACTATGCAAAGACACCAGGCTTATTTTTGCCAATGCTAAAGCCTACACACCAAACAAACGTTCAAAGatttacagtatgACTCTGCGTCTGTCTGCATTCTTTGAGGAGCGCATTCGTAAAATCATATCTGACTACAAGACTGCAGTTAAAAGCAGTTTGAAGCTGAGACGCAGTCAGAGGTTTAAAAAGAGAACTCAGCAGCAGGAACCTGTTTTTCCTCCTCCCAGGGTTGAATCCACTAGTCAGAAGAGGGGTGCTGTTAAAACTCAGGAAAAAGTGGAACCACCTACAACCAAACCTACCTCGGCCAAAGCCTCTACAGTGGAGCGCCATCGCAGTAAGAAGCGAAGGCGGCTCAGTTCTACCTACACATCAGTGGAGGACTCCAATAAGAGTGCATCATCTCTGTCAGAATCTGAAAATGACAGTGAAGTCTCATTGAGTGAATCAAAGGAAGAATTCCCTCCGTCTTCTCAGCCATTCAGACGGGAAACAAGAGCAACACGGAGAGCCATGCAAAGAGAGAGGCGAGGAAAAAGAATGTCACTGACAGTGGAAGTCAAATTGACTGCTCAACtggggatgatgatgatgctgagtATTCTGGGAAGTCCAGCTCATTAAGACGACTGCAGTCGAGCAGAACCAAAAACAGGAACACCCGACTCACTCGGAACTCTGAGAAAAGAAAGCCAGGTAGTAATCAGGTGAACGGGCTTAGCAGCAGATCCACCCGTGCAGAGCGCAGAAGAGTTCGACACAGCAGTGGCTCTGACCTGGAACGTTCTGAAGACGAGGAGAATATGGAAAATGCGGCTGACGCAGACCAGAGTCGCCAGCCCAGGAAAACCGCTATGGCTGCAGTCAGTAAGATGAAGCTGATTGACGCATCTGAGGAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374593 lncRNA upstream 33926 7426461 ~ 7433424 (+) True G316288
TU374285 lncRNA upstream 337473 7127691 ~ 7129877 (+) True G316000
TU374244 lncRNA upstream 433544 7033565 ~ 7033806 (+) True G315968
TU374158 lncRNA upstream 532173 6934949 ~ 6935177 (+) True G315901
TU374147 lncRNA upstream 551809 6914261 ~ 6915541 (+) True G315894
TU374628 lncRNA downstream 15078 7505079 ~ 7505404 (+) True G316317
TU374657 lncRNA downstream 75085 7565086 ~ 7568068 (+) True G316339
TU374659 lncRNA downstream 75085 7565086 ~ 7568068 (+) False G316339
TU374677 lncRNA downstream 92331 7582332 ~ 7590920 (+) False crsp7
XR_004580345.1 lncRNA downstream 158703 7648704 ~ 7650020 (+) True LOC117599993
XM_034314700.1 mRNA upstream 13642 7442104 ~ 7453708 (+) True LOC113543091
XM_034314701.1 mRNA upstream 13642 7442104 ~ 7453708 (+) False LOC113543091
XM_034314702.1 mRNA upstream 13642 7442104 ~ 7453708 (+) False LOC113543091
XM_034314703.1 mRNA upstream 13642 7442104 ~ 7453708 (+) False LOC113543091
XM_026941410.2 mRNA upstream 72886 7259286 ~ 7394464 (+) True dscamb
XM_026940815.2 mRNA downstream 10420 7500421 ~ 7504697 (+) True rbp2a
XM_026941284.2 mRNA downstream 63560 7553561 ~ 7554925 (+) True foxl2a
XM_026941351.2 mRNA downstream 78120 7568121 ~ 7575380 (+) False LOC113543252
XM_026941352.2 mRNA downstream 78465 7568466 ~ 7575380 (+) True LOC113543252
XM_026941350.2 mRNA downstream 82896 7572897 ~ 7575380 (+) False LOC113543252
TU374286 other upstream 331849 7133459 ~ 7135501 (+) True G316001
XR_004580329.1 other upstream 522742 6937340 ~ 6944608 (+) False LOC113543138
TU373737 other upstream 1240110 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 1570520 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 2247732 5219545 ~ 5219618 (+) True trnat-agu_13
TU374748 other downstream 205533 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 773338 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 778708 8268709 ~ 8269198 (+) True G316745
TU375607 other downstream 1321956 8811957 ~ 8812820 (+) False LOC117599964
TU375892 other downstream 1922322 9412323 ~ 9415164 (+) True G317390

Expression Profile