RNA id: TCONS_00008058


Basic Information

Item Value
RNA id TCONS_00008058
length 2925
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_004206
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30535943 ~ 30612166 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGCCAATCTGGGACTTCATCCTATTTTTCTCTCGCTCTAAATCTCAGCATCTTCCTCTTAGTTTTCTCCTATGAGCTCACGCCAGTCATTGCAGGCAGCTCCAAATCGAGCTTAGATGTAGATACTTCCAATGCAAACTCTTCTCAAGAGACATGTGGTGGTAGTTATGAATGCAAAGAGGGGGTGATCTTGCCAATTTGGACACCGGTGAACCCGTCCTTTGGGGATAAGTTGGCCAGAGCCACTGTGTACTTTGTCGGTTTGTTCTACATGTTCCTAGGAGTATCCATCATTGCAGACCGCTTCATGGCTTCCATTGAGGTCATCACATCCCAGGAGAAAGAGATCACCATTAAGAAGCCCAACGGAGAAACCACAACTACTACAGTTCGTATTTGGAATGAAACGGTCTCAAATCTGACTCTCATGGCTTTGGGTTCTTCAGCCCCAGAGATTCTGCTGTCCGTGGTTGAAGTGTGTGGGCACAACTTTGACGCAGGAGAGCTGGGCCCAAACACCATTGTGGGAAGTGCAGCTTTTAACATGTTTGTCATCATCGGTCTCTGTGTCTCTGTGATACCCGAAGGAGAGCACCGGAAGGTCAAGCACCTGCGGGTCTTCTTTGTCACCGCCACTTGGAGTATCTTTGCATATACGTGGCTTTACCTGATTTTGGCAGTGATTTCCCCAGGTATCGTGGAGGTCTGGGAGGGACTTCTTACTCTGTTTTTCTTTCCTATTTGTGTATTATTTGCTTGGGTTGCAGACCGTAGACTTCTGTTTTACAAATACGTGTATAAACGTTACAGAGTTGGAAAGAAACGTGGGATAATTATAGAGACTGAAGGTGAACCAGAACTCCAGTCAAAGGCTGATATCGAAATGGATGGCGGGATGCTTAACTCTCATGCCGAGGAGTTTTTAGACGGCGCAGTTGATAATGAAGATAAAGACGCGGATGAGGACGAGGCCAGAAGGGAAATGGCCAAGATTTTGAAGGAACTGAAACAGAAGCATCCGGAAAAGGAGATGGAGCAGCTTGTTGAGCTTGCCAACTACCACGTCCTCAGCCAGCAACAGAAGAGCCGTGCTTTCTATCGCTGTCAGGCCACTAGACTTATGACTGGTGCAGGAAATATACTGAAGAAACATGCTGCAGATCAAGCCAGAAAAGCACTTGGTATCCATGAACTTCGATCGGAAGTCTCCGATAATGATATCTCCTCCAAGATTTTCTTCGACCCTGGGACATATCAGTGTTTGGAGAACTGTGGAACTGTGGCTTTGAACGTGGTTCGACGCGGCGGCGACTTAACCAGCACTGTGTCAGTGGAGTACAGAACTGAGGATGGCACTGCCAATGCAGGTTCTGATTACCAGTTCACTGAGGGTGTCATAATCTTCAAACCAGGTGAGACCGAAAAGGAGATTAGAGTGGACATTATCGACGATGATATATTTGAAGAAGATGAACACTTCCTGGTTCATCTCAGCAATGTCAAGGTCATATCTGAAGGAGCCAACAATGGAAACCCAGGTACCAATCATGTGGACGCTTTAGCTGGTCTTGGCCTTCCTTCAACAGCTACCGTGACTATCTTTGATGATGACCATGCTGGCATCTTCTTATTTGAGGAACCAATTGTTCATATCAGTGAAAGCATTGGCATGATGGAGGTGAAGGTGGTACGTACATCTGGAGCCCGTGGAGTAGTGGTAATCCCCTATAAAACCATCGAAGGCACAGCCAAAGGTGGAGGAGAGGACTTTGAAGACACCCATGGAGTCTTGGAGTTCCAGAATGATGAGATTTCCAAGACTATTCAGATCAATATAATCGATGACGAGGAGTATGAAAAGAATAAGAACTTCTTCCTGGAGATTGGAGAGCCACAATTGGTGGAAATGAGTGAAAGAAAAGCTATGTTGCTGCATGAATGTGGTGGATTCGTGAAGACAGATAAGCAACTTTATGGCAGGGATGTGTACCGGAAAGTGCAGGGTAGAGACAAACCAATCCCCTCCACCATTATCAGCATCTCAGagGACGGGGAGGAAGAGACCCTGACTAAAAAAGAGAAAGATGAGAGGCGTATTGCTGAAATGGGTCGTCCGACCCTGGGTGAACACGTGAAACTTGAAGTAATCATTGAAGAGTCTTATGAATTCAAGAGCACCGTCGACAAACTCATAAAGAAAACCAACTTGGCCCTTCTGGTGGGTACCAACAGTTGGAGAGACCAGTTTGTTGAAGCCATCACTGTCAACTCAGGGGACGATGATGATGAAGAGTGTGGCCAAGAAAAGATGCCGTCCTGCTTTGACTACGTCATGCACTTCCTCACGGTATTCTGGAAGGTTCTGTTTGCATTTGTGCCCCCTACTGACTACTGGAACGGCTGGGCTTGTTTCATCGTGTCCATCATGATGATTGGCGTCCTCACCGCCTTCATCGGGGATATAGCTTCTCATTTCGGGTGCACTATTGGCCTGAAAGACTCTGTGACTGCAGTCGTGTTTGTGGCACTGGGAACGTCTGTGCCAGACACATTTGCCAGTAAAGTGGCAGCGATCCAGGATCAGTACGCGGACGCCTCCATCGGCAACGTGACAGGCAGCAATGCAGTGAACGTGTTTTTGGGCATCGGAGTGGCCTGGTCTATTGCTGCCATCTTCCACCAGTCTCAGGGGCGGCAGTTTCGCGTGGACCCCGGGACGCTGGCCTTCTCTGTCACACTCTTCACCATCTTTGCCTTCGTCTGCATCGCCGTCCTCATGTACCGCCGCAGGCCTGAGATCGGCGGAGAACTGGGCGGCCCGCGCCATCCCAAAATAATTACCActacactgtttttcagtctcTGGTTGATGTACATCATACTGTCCTCAATGGAGGCTTATTGCATCATCAAGGGTTTCTAA

Function

GO:

id name namespace
GO:0045214 sarcomere organization biological_process
GO:0055085 transmembrane transport biological_process
GO:0098703 calcium ion import across plasma membrane biological_process
GO:0030001 metal ion transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0006816 calcium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0042383 sarcolemma cellular_component
GO:0030424 axon cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0005432 calcium molecular_function
GO:0015491 cation molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-1 Enables calcium:sodium antiporter activity. Acts upstream of or within several processes, including calcium ion transport; cellular calcium ion homeostasis; and sarcomere organization. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon; postsynapse; and sarcolemma. Predicted to be integral component of plasma membrane. Is expressed in heart primordium and pericardial region. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human SLC8A1 (solute carrier family 8 member A1).

Ensembl:

ensembl_id ENSDART00000172244

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008053 lncRNA downstream 171740 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008040 lncRNA downstream 574644 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 615543 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008027 lncRNA downstream 774534 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008025 lncRNA downstream 799298 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008812 lncRNA upstream 598818 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008813 lncRNA upstream 603524 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008814 lncRNA upstream 1548817 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 1553553 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008816 lncRNA upstream 1764511 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008055 mRNA downstream 27694 30367638 ~ 30508851 (-) False XLOC_004205
TCONS_00008054 mRNA downstream 27702 30365668 ~ 30508843 (-) False XLOC_004205
TCONS_00008051 mRNA downstream 171698 30355442 ~ 30364847 (-) False XLOC_004204
TCONS_00008050 mRNA downstream 184212 30348273 ~ 30352333 (-) True XLOC_004203
TCONS_00008049 mRNA downstream 195114 30332959 ~ 30341431 (-) True XLOC_004202
TCONS_00008061 mRNA upstream 25367 30626768 ~ 30634286 (-) False XLOC_004207
TCONS_00008062 mRNA upstream 27392 30628793 ~ 30630628 (-) False XLOC_004207
TCONS_00008063 mRNA upstream 29504 30630905 ~ 30636163 (-) True XLOC_004207
TCONS_00008064 mRNA upstream 437008 31038409 ~ 31039533 (-) True XLOC_004208
TCONS_00008065 mRNA upstream 543319 31144720 ~ 31146808 (-) True XLOC_004209
TCONS_00008056 other downstream 27754 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 171721 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 380710 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 435288 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008039 other downstream 589905 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008067 other upstream 568948 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008075 other upstream 2129764 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 2769850 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 3364757 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 3754143 34355544 ~ 34355662 (-) True XLOC_004245

Expression Profile

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