RNA id: TU485453


Basic Information

Item Value
RNA id TU485453
length 278
lncRNA type read_through
GC content 0.38
exon number 2
gene id G408937
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6639023 ~ 6670765 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgttattttatatcttatgtgtACCATTGTTATATCAGGTTACGAAATGAATGCTCTAGAAGGCTGTTTCCATCATGTTGTTTTGTGTAAGAAGACTGCTATACAAGTGACTTTTAAACACAACTGAGTTCATTTTTTCAAAGCTCACACAGTTAGCACAGAGTGGACTGAACTGTGGATCAGATTTCCAGCAAATCTctgtggattggctacactaaattgcacttaagtgtgaatgagtgtgttttccaggatgtattcccaccttgcacccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485412 lncRNA upstream 46983 6388520 ~ 6592040 (+) True G408904
TU485385 lncRNA upstream 107116 6527297 ~ 6531907 (+) True G408894
TU485423 lncRNA upstream 181338 6434997 ~ 6457685 (+) True G408913
TU485416 lncRNA upstream 201900 6396456 ~ 6437123 (+) False LOC117596579
TU485373 lncRNA upstream 263441 6374374 ~ 6375582 (+) True G408892
TU485393 lncRNA downstream 94146 6764911 ~ 7071033 (+) True LOC117596594
XR_004577654.1 lncRNA downstream 124427 6795192 ~ 6796340 (+) True LOC117596596
XR_003403035.2 lncRNA downstream 207873 6878638 ~ 6880233 (+) True LOC113529310
XR_004577647.1 lncRNA downstream 257835 6928600 ~ 6931893 (+) True LOC117596589
TU485502 lncRNA downstream 258287 6929052 ~ 6929618 (+) False LOC117596589
XM_034301890.1 mRNA upstream 53531 6494417 ~ 6585492 (+) True LOC117596544
XM_034302066.1 mRNA upstream 201260 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA upstream 201260 6432886 ~ 6437763 (+) False LOC117596579
XM_034301889.1 mRNA upstream 254799 6380073 ~ 6384224 (+) True LOC117596543
XM_034302068.1 mRNA upstream 270240 6363164 ~ 6368783 (+) True LOC117596580
XM_034301831.1 mRNA downstream 761723 7432488 ~ 7497053 (+) False LOC113529075
XM_034301830.1 mRNA downstream 761724 7432489 ~ 7497053 (+) True LOC113529075
XM_026918030.1 mRNA downstream 849683 7520448 ~ 7525893 (+) True nrl
XM_026917456.2 mRNA downstream 859462 7530227 ~ 7546810 (+) True LOC113528764
XM_026917457.2 mRNA downstream 859488 7530253 ~ 7546810 (+) False LOC113528764
TU485443 other upstream 75247 6556363 ~ 6563776 (+) True G408929
XR_004577658.1 other upstream 362358 6272032 ~ 6276665 (+) True LOC117596600
trnag-gcc_30 other upstream 896161 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 902762 5733795 ~ 5736261 (+) False lyrm2
XR_003403042.2 other upstream 1979328 4655964 ~ 4659695 (+) False LOC113529331
TU485391 other downstream 178741 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1207030 7877795 ~ 7878545 (+) True G409600
TU487747 other downstream 3507284 10178049 ~ 10182672 (+) True G410936
TU488185 other downstream 4093449 10764214 ~ 10764729 (+) True G411297
XR_004577598.1 other downstream 4444858 11115623 ~ 11147509 (+) False aig1

Expression Profile