RNA id: XR_004577647.1


Basic Information

Item Value
RNA id XR_004577647.1
length 1533
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id LOC117596589
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6928600 ~ 6931893 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttaagttgctttggttgtgtaaGAGCTCGCGGACGCTCGCTTTCTGAATTCAGcgctattaccgctaagtgtctaaaagccgcgcccatTCAATTTTACGTGCAGCTAgattaaccgtggtttcaggaagagTGGCTGCTTAACCGCAGTGAAGCTTGGAACGGCTTCAAAGCTTTTGCCACAGTAAgggcaaaacatttcaatttgtgaaacagaagaaaagaacttGAATCATTCAACTGTTTTCGCTGGGCTAAGGTAATCAGCAGACTGAAAAAGCATAGTTCCTTTACACTTTGATAGTCATACCCCGtgtccaatcagaaacgagcatTGATtgatgttcaataaggacctaCCCTTTCCGTTTTCAgtttatgttgtgtttttggtttgttaaagtGTTCTGCACTTTAGGCATTTGGCATGAGAGACACACTTTCAGGCTCTGTTTCATGTTCTCACGCTGCCTAAGTAAATCTCAAGCCAAATTAAATAAGCCAACGTAGTCGCAAATTTgctcatatgatttttttttttctgtcagtatCAAGAAGGTGTGGGGTTTAATTAAACCAGTGAAGTCCCAACTTCTTGATTGGACCAGTCTGAAGCAGCTGGGTTCTGTACCAGCCACATTTCTTCCTGCTCTGTGCAAGGTCACTGAACAAAATGAAGATGGTGCTGGAGAAAAGACAGAGGATAGTGGATTAGGTAGCTAGaaTGTAAGTAAAGAAAAGCAATCCCTAAAAAGAAAGACTGCAGGGGCAGCCACATACAATTGCAAATTCAACCCCCATGGTCAAATGAATGAGCATTTATCAAGGCTGGAAGTACACCATTCCATTTTTGGTGCACAGTATGCAGACATGAACTTGAATGTAAGCACTGAGGAAGAACAGATGTGCTGCGCCATGTTAACAGGGAGTCGCACCTGAAAAAAGTACAAACCCTGGAGAGCTGTTCCAAACTGGACAAGTACACCTTGCCAAGAACAAGTCAAATGGCCCAGCTCGAGGCACAGCTGATCGATATGTGTTGAACTGTCTATGAAATTTTAGCCTATTTGAGTGTAGATGAAAAGCAAGCCAGATTTGTGTGACTCCATTCCCTTTTTGAGGATCCAATTACTGAAGTTCATCTTCTCTGTTACTGAGCACTTCTACCTACATTTATGGAGTTTAATCTGTTATTCCAGAGACAAGACCCGTGTCTCCATCTCCTTCATGGGCAGATAAGGAATTTCATACGAAGGCTGATGTCAAAGTTCCCGAAGCCTGTAGCTTTCAAAATGACAAGTTTAGAGACTGTTGACCTTCTAGGACAAGAAAACCAACTGCCAGGTGAATAAAGctcaagtgaagtttgttagatgacCCCTAGGAAGACTGAGGGATCGAGTCAACACAGCAGTAGACTTCAGGAGCCAAACTTCTTCTGAACGAATTGCAATGTAACACAGTTTCcttttcaattcaataaaaatgaccaatgatactttttatatatcttaaaaaaaatcactacaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403035.2 lncRNA upstream 48367 6878638 ~ 6880233 (+) True LOC113529310
XR_004577654.1 lncRNA upstream 132260 6795192 ~ 6796340 (+) True LOC117596596
TU485453 lncRNA upstream 257835 6639023 ~ 6670765 (+) True G408937
TU485441 lncRNA upstream 266901 6614797 ~ 6661699 (+) False LOC117596573
TU485387 lncRNA downstream 22691 6954584 ~ 7032454 (+) True LOC117596583
TU485506 lncRNA downstream 29146 6961039 ~ 7029547 (+) True G408985
TU485516 lncRNA downstream 81842 7013735 ~ 7015443 (+) True G408991
XR_004577631.1 lncRNA downstream 98178 7030071 ~ 7031614 (+) False LOC117596583
TU485523 lncRNA downstream 109360 7041253 ~ 7047384 (+) True G408997
XM_034302054.1 mRNA upstream 189073 6613273 ~ 6739527 (+) True LOC117596573
XM_034302069.1 mRNA upstream 274881 6633365 ~ 6653719 (+) True LOC117596581
XM_034301890.1 mRNA upstream 343108 6494417 ~ 6585492 (+) True LOC117596544
XM_034302066.1 mRNA upstream 490837 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA upstream 490837 6432886 ~ 6437763 (+) False LOC117596579
XM_034301831.1 mRNA downstream 500595 7432488 ~ 7497053 (+) False LOC113529075
XM_034301830.1 mRNA downstream 500596 7432489 ~ 7497053 (+) True LOC113529075
XM_026918030.1 mRNA downstream 588555 7520448 ~ 7525893 (+) True nrl
XM_026917456.2 mRNA downstream 598334 7530227 ~ 7546810 (+) True LOC113528764
XM_026917457.2 mRNA downstream 598360 7530253 ~ 7546810 (+) False LOC113528764
TU485391 other upstream 76646 6849506 ~ 6851954 (+) False LOC117596594
TU485379 other upstream 133380 6483101 ~ 6795220 (+) True G408893
TU485443 other upstream 364824 6556363 ~ 6563776 (+) True G408929
XR_004577658.1 other upstream 651935 6272032 ~ 6276665 (+) True LOC117596600
trnag-gcc_30 other upstream 1185738 5742792 ~ 5742862 (+) True trnag-gcc_30
TU486240 other downstream 945902 7877795 ~ 7878545 (+) True G409600
TU487747 other downstream 3246156 10178049 ~ 10182672 (+) True G410936
TU488185 other downstream 3832321 10764214 ~ 10764729 (+) True G411297
XR_004577598.1 other downstream 4183730 11115623 ~ 11147509 (+) False aig1
XR_004577599.1 other downstream 4183731 11115624 ~ 11145680 (+) False aig1

Expression Profile