RNA id: TCONS_00008153


Basic Information

Item Value
RNA id TCONS_00008153
length 1131
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_004267
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36342997 ~ 36350993 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATGAATTCAGCGGGGTAGGAACCCAAAGTTGACTTGCAGTGTTTTTTGTCGAGCGGGGATGAATGAACACTTCCTGTACTGTTGAAACTAGCAAACTCACCCTCCACTGCAGAAGATTTGCGTTTCAACATGTTCCTGACAAGATCAGAATATGACAGAGGAGTAAACACTTTCTCACCAGAAGGAAGGCTTTTTCAGGTTGAATATGCCATTGAAGCCATCAAGTTGGGGTCCACAGCCATTGGCATTCAGACATCAGAGGGAGTTTGTCTTGCTGTGGAGAAGAGAATAACCTCTCCTCTGATGGAGCCCAGCAGCATTGAAAAGATTGTAGAGATCGACTCTCACATTGGCTGTGCCATGAGTGGCTTGATAGCTGATGCCAAAACTCTTATTGACAAAGCAAGAGTAGAAACACAGAACCATTGGTTTACCTACAATGAGACGATGACTGTGGAGAGCGTAACACAAGCCGTTTCTAATCTTGCTCTGCAGTTTGGAGAGGAGGATGCTGACCCCGGCGCTATGAGCCGTCCTTTTGGTGTCGCTTTGCTTTTCGGAGGTGTGGATGAGAAAGGACCTCAGCTATACCACATGGATCCTTCAGGCACTTTTGTCCAGTGTGACGCGAGAGCAATCGGCTCAGCATCTGAAGGCGCTCAGAGCTCTCTTCAAGAGGTTTACCACAAGTCTATGACGTTAAAGGATGCCATTAAGTCTTCTCTCACTATCCTGAAACAAGTGATGGAGGAGAAACTCAATGCCACCAATATTGAGCTTGCCACTGTAGAGCCGGGCAAAACCTTTCACATGTACACAAAAGAAGAGCTGGAGGATGTCATCAAGGATATCTAAACGTGCTAAGCATAACAGATGTTCAATATGAAAAGTCCAGTGTAATTTTTGTGTGAATCATCACACAGCAGAATGGATACATAATACTCTGACTGCATTGTACGGTTTGCCTGTTCAGACGGGAATCGAATCTTTATACTTTTCTTTTTCCTTCTGTCAGTCCCAAAATTTCTATAGTTCTGTACAAGCACAGGACAGCAGATCTTGTCATTGAATTAAATGGGGGGGTTCTTTTTGTTACCAATCACTGCGTTAATAAACTGTTGTTGAAAA

Function

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040625-96 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).

Ensembl:

ensembl_id ENSDART00000020655

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008152 lncRNA downstream 51315 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008839 lncRNA downstream 96241 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008124 lncRNA downstream 601553 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 601553 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008837 lncRNA downstream 601556 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008841 lncRNA upstream 133399 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 133399 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 133399 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008842 lncRNA upstream 217931 36568924 ~ 36569266 (-) True XLOC_004270
TCONS_00008843 lncRNA upstream 231459 36582452 ~ 36687155 (-) True XLOC_004269
TCONS_00008150 mRNA downstream 1808 36280523 ~ 36341189 (-) False XLOC_004266
TCONS_00008151 mRNA downstream 1969 36281610 ~ 36341028 (-) False XLOC_004266
TCONS_00008146 mRNA downstream 63333 36254284 ~ 36279664 (-) False XLOC_004265
TCONS_00008148 mRNA downstream 63377 36258538 ~ 36279620 (-) False XLOC_004265
TCONS_00008149 mRNA downstream 63395 36263612 ~ 36279602 (-) True XLOC_004265
TCONS_00008156 mRNA upstream 71240 36422233 ~ 36450770 (-) False XLOC_004268
TCONS_00008157 mRNA upstream 71322 36422315 ~ 36446655 (-) False XLOC_004268
TCONS_00008158 mRNA upstream 98705 36449698 ~ 36474438 (-) False XLOC_004268
TCONS_00008159 mRNA upstream 101301 36452294 ~ 36475124 (-) False XLOC_004268
TCONS_00008160 mRNA upstream 101523 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008119 other downstream 1117858 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1876484 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1987335 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2376725 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2971630 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 948378 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1824078 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2596994 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2738882 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3831688 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU51150 True 1252 lncRNA 0.44 10 NC_053115.1 13342319 ~ 13347346 (-)