RNA id: TCONS_00008986


Basic Information

Item Value
RNA id TCONS_00008986
length 1281
RNA type mRNA
GC content 0.55
exon number 1
gene id XLOC_004503
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5458462 ~ 5460203 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGAGCGATGGTGCTGAAAGGAACAGCTCCGGCGTGGGTGTGCGCGCGCTCACCGGCTGCGCTCTCTGCGCGCTCATCCTCTCCACACTGCTGGGCAACACGCTCGTGTGCGCCGCCGTCATCAAATTCAGACATCTCCGATCCAAAGTCACCAATTTTTTCGTCATATCCCTAGCAGTATCTGATCTGTTCGTGGCTGTCCTGGTCATGCCGTGGAAGGCTGTCTCCGAGGTGGCCGGCTGCTGGCTCTTCGGCGGCTTCTGTGACACTTGGATAGCTTTTGACATCATGTGTTCAACGGCGTCAATCCTCAACCTGTGCATCATCAGTTTGGACAGATACTGGGCCATCTCAAGCCCCTTTCGCTACGAGCGTAAAATGACCCAGAGGATGGCCTTTATAATGATCGGCATGGCGTGGACACTTTCCGTCCTGATCTCTTTCATTCCGGTCAAACTTAACTGGCACAGAGCTGTGGATCACAACCTCACCGTCCCATCCGAGGACTGCACCGCCTCTTTAAACAGGACGTATGCCATCGCGTCCTCGCTCATAAGCTTTTACATCCCTGTTATAATCATGATAGGAACATATACGCGGATCTACCGGATCGCGCAAACGCAGATTAGGAGGATCTCCATTTTGGAGCGCGCGGCCGGACACGCGCAGAGCCAGCAGGACTGCGCGAGCGAGCAGTCGCTGAAGAGCACGTTTAAGAAAGAAACGAAGGTGTTGAAAACGCTTTCCATCATCatgggtgtgtttgtgttttgctggCTGCCCTTTTTCGTCCTCAACTGCATCGTGCCGTTCTGCGACACTCTTGGAGACTCTCCGTGCGTGAGCAGCACCACCTTCAACATCTTCGTGTGGTTCGGATGGGCCAATTCATCGCTCAACCCGGTGATCTACGCGTTCAACGCGGATTTCCGCAAAGCCTTCAGTACTATTCTCGGCTGCAACCGACTCTGCGCGTCTTCCACGGTGGAGACGGTGAACTTCACCAACGAGCTCGTGTCCTACCATCACGACACCACTCTGATGCACAAGGACGCGCAGGGAGTTTCCAGTCCGCGCCTGGATTTGGTCCCGGGACACTGCGATCAGACGGACGTGCCTTTCGATAAGGTATCGGTCGTGTCCAATTCGTCTCGTGTCCAAAGAAGCGCGCTGCTGCCGCAGGACGCAGAGATGGAGATCTGCCTGGACATGATGCCCTTCACCTCTGCTGGACTCAGCGACTGCTGTGCGATTCCGGGACAGATTGAGGAGTGTTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0071880 adenylate cyclase-activating adrenergic receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-145 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating adrenergic receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000059735

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010880 lncRNA upstream 623148 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010879 lncRNA upstream 706610 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010878 lncRNA upstream 723474 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010877 lncRNA upstream 985314 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010876 lncRNA upstream 1008010 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010719 lncRNA downstream 521522 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00008994 lncRNA downstream 581836 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008995 lncRNA downstream 581851 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00008996 lncRNA downstream 584257 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00010881 lncRNA downstream 684963 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00008985 mRNA upstream 59884 5358409 ~ 5398578 (+) True XLOC_004502
TCONS_00008984 mRNA upstream 63957 5251647 ~ 5394505 (+) False XLOC_004502
TCONS_00008982 mRNA upstream 233685 5209822 ~ 5224777 (+) False XLOC_004501
TCONS_00008983 mRNA upstream 236215 5215795 ~ 5222247 (+) True XLOC_004501
TCONS_00008980 mRNA upstream 253833 5189776 ~ 5204629 (+) False XLOC_004500
TCONS_00008988 mRNA downstream 70505 5530247 ~ 5582060 (+) True XLOC_004504
TCONS_00008989 mRNA downstream 248658 5708400 ~ 5711920 (+) True XLOC_004505
TCONS_00008990 mRNA downstream 316111 5775853 ~ 5810279 (+) True XLOC_004506
TCONS_00008991 mRNA downstream 518035 5977777 ~ 5981577 (+) False XLOC_004507
TCONS_00008992 mRNA downstream 542973 6002715 ~ 6006865 (+) True XLOC_004508
TCONS_00008977 other upstream 368532 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 396765 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 401106 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 405884 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 406765 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 1248387 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 1960290 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 2101323 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 2272792 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 4674624 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_02939538_02940848.mRNA True 2926 mRNA 0.47 1 CI01000047 2939493 ~ 2942418 (-)