RNA id: AMCG00000246


Basic Information

Item Value
RNA id AMCG00000246
length 3599
RNA type mRNA
GC content 0.50
exon number 30
gene id AMCG00000246
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 8527438 ~ 8550859 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATCATGGAGAAAGGGACTCAAGCGAAAAAAGCCTCCGCTCCCTCTGTGTCGCAGATCAACGCCGAGTATGTAACACAGttggCAAATAAATATTGGGCGCCACATGTCAAGAAGAAACTCCCCTTTGACCCCAAGgtccTGGAAGATGTGTATCAGAAAGAAATTCTCAAGTCTAAgTTTGCCATCAGAAAAATCATGCTGTTGGAGTTTAGTCAGTATCTGGAGAATTACCTGTGGGTGAATTATTCTCCCGGCGTGTCCAGTAATGGCTATTTAATGTCCATCTGCTGTATTGTTAATGAAAAGTTCAGAGAAAATGTACCAGCGTGGGAAGTATTTAAGAAGAAACCAGAGCACTTTCCATACTTCTTCCAGTGTGTCATGGCAGCATCGCTGGCTGAGGAAGGAGAGTGTCTGTCGCTGCGAGAACAAACTGTCCTGCTGCTCTTTCTTGATCACTGTTTTAACAGCCTGgaAGTGGATTTGATTAGAGAGCAGGTACAGCAGCTGATATCCCTCCCCATGTGGGTGTGTCTTCTCCCGGCCCGACTTGATCATGAATTgaagaaaacaactaaactgCAGAAATTCTGGAACCTGATCAAGAAGAATTATGACAAAATGGATCTGAAGGCAAAGGAGCAGGCCAATATAGAGAGGACATTCCTTTCTTTACTCATTAAGAAATTCCTGAGAGTACTCATGTCCATCTCTCCGTCAGATGCGGTCTCCATGGACAAGGTGCACTACTGTGAACGCTTCATTGAGCTCATGATTGATCTGGAGGCTTTGCTTCCCACGCGTCGCTGGTTTAACACCGTCCTCGACGATTCACACCTTGTGGTCAGCTGTTACCTGTCTGGCCTCACTCACAGAGAGAAGGATGGGCATCTCTTCTGCCAGTTGCTGGACATGTTGAAGTTCTATACAGGCTTTGAAATCAATGACCAGACGGGTAACGCTCTGACACAGAAAGAAATGACTACCTTGCACTATGACCGAATCACATCTCTGCAGCGTGCAGCTTTCGCTCATTTCCCAGAACTTCATAACTTTGCCTTGTCAAACGTAGCGGCAGTGGACACTCGAGAATCGCTCTTAAAACACTTTGGCCCTCTAagtCCCAACACTCTCCACCGGGTGGCATCCTACCTCTGTCTTTTGCCAGCGCTGCCTGAAGGCCAGGACACAACCTACGAAAAGGAAATGCTGCTTGAACTGCTGGTTTCTCGGCATGAAAGGAGAATTTCCCAGATAGAGCAACTAAACCAGATGCCCCTCTATCCCACCGAAAGGATCATATGGGATGAGAACATCGTCCCCACAGAGTACTACTCTGGCGAAGGATGTCTGGCTCTGCCTAAACTCAACCTGCAGTTTCTAACTCTGCACGACTACCTGCTGAGGAATTTCAACCTGTTCCGCTTGGAGTCGACCTATGAGATCAGACAGGACATAGAGGATGTGGTTAGTCGGATGAAACcatgGCAGTCGGAGTACGGTGGGGTTGTGTTTGGTGGTTGGGCAAGAATGGCACAGACGATCCTGGCCTTTTCAATTGTCGAAGTTTCCAAACCAAACATCGGCGAGAACTGGCCGGCCAGGGTTCGAGCCGATGTCACAATCAATCTGAACGTCCGCGATCAGATCAAGAGCGAATGGGAGGGACTCCGAAAGCATGACGTTTGTTTTCTGATCACGGTGCGACCCACCAAGCCCTACGGCACCCGGTTTGACCGCCGCCAGCCGTTTGTGGAGCAGACGGGCCTGGTGTACGTGCGGGGCTGTGAGATACAGGGCATGCTGGACGAGAAAGGGAGAGTCATTGAAGAAGGTCCTGAGCCCAAACCCAAGCTCAAGGGAGATTCAAGGACTTTCAGGGTCTGGCTGGATGCGAACCAGTATCAGCAAGACATGACCAACACCATCCAGACCGGCTCTGAGGATGTCTATGAAACCTTCAACATCATCATGAGAAGGAAACCCAAGGAGAACAACTTCAAGGCTGTTCTAGAGACCATCCGCAACCTGATGAACACGGACTGCGTGGTCCCCGACTGGCTCCATGACATCATCTTGGGCTACGGAGACCAAGGCAGTGCACATTACTCCAAAATGCCCAATCAGATCTCCTCACTGGACTTCAATGACACCTTCCTCTCCATCGATCACCTGAAGGCTTGTTTCCCTGATTACACAATCAAGGTCACTGAAGAGAATCCGACCCTTCAGAAACCGCCCTTCAGGATCAAGTTCCCAGTGGTGTCTATTAAAGGAAAGAAACGCAAAGCTGACGAAGAGGAGGAtgagaggaaggaggaagacTACACCTTGGTTGTCGAGCCCCACGTTATTCCAAACCGGGGGCCATATCCTTACAACCAGCCCAAACGcaatacaattaatttcacaCCTACACAAATTGAAGCTATACGAGCAGGCATGCAGCCAGGGCTAACCATGGTTGTGGGGCCTCCAGGTACCGGGAAAACAGATGTGGCTGTGCAGATCATTTCCAATCTCTATCACAATTTCCCTGAACAGAGAACTCTTATAGTAACACATTCAAATCAGGCCCTGAACCAGCTGTTTGAGAAGATCATGGCCCTGGACATTGACGAGAGGCACCTCCTGCGCATGGGCCACGGCGAGGAGGCTCTAGAGACCGAGAAGGATTTCAGCAGGTACGGCCGAGTGAACTACGTCTTGGCCCGGAGACTGGAGCTGCTCAGGGAGGTCGGCCGTCTACAGGAGAGTCTCGATGTGCCTGGGGACGTGTCTTACACGTGCGAGACAGCTGGGCATTTCTACTTGTATCAGGTGATGTCCCGTTGGGAAGAGTACCTCAGTAAAGTGAAGGTAAAACCCGGAAAGCCAATCGATGTTGCAGACGTCTCCAATCACTTCCCGTTTCATAAATATTTCTCCAACGCGCCTCAGCCGGTTTTCAAAGGGAGAAGCTATGAGGAAGACATGGACATCGCGGAGGGGTGCTACAGacacattaagaaaatatttacgCAGCTTGAGGAATTCAGAGCATTTGAACTTCTGCGCAGTGGCCTCGACAGGTCCAAGTACCTGCTGGTGAAAGAAGCCAAGATCATAGCCATGACTTGCACACACGCGGCTCTCAAGCGACATGACCTAGTTGAGCTGGGGTTTAAGTATGATAACATCTTGATGGAGGAGGCAGCGCAAATCCTAGAGATTGAAACTTTCATTCCACTCCTGCTGCAGAACCCGGAGGATGGCTTCAGCAGACTGAAGCGCTGGATAATGATAGGAGACCACCATCAGCTGCCTCCTGTCATTAAAAACATGGCCTTCCAGAAATACTCCAACATGGAGCAGTCCCTCTTCACACGCTTTGTGCGCCTGGGGGTGCCCACTGTGGACCTGGATGCCCAGGGAAGAGCCAGAGCCAGTCTGTGCAACTTATACAACTGGCGCTACAAGCGTCTGGGGAACCTGCCTCACGTGCAGCAGCTGCCCGAGTTCCGCGCGGCCAACGCCGGTCTGTCCTACGACTTCCAGCTCATCAACGTGGAAGATTTCAATGGTGTCGGAGAGTCTGAGCCCAATCCCTACTTCTAC

Function

GO: NA

KEGG:

id description
K12874 AQR; intron-binding protein aquarius

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187484 lncRNA upstream 571049 7955972 ~ 7956389 (+) True G149001
TU187435 lncRNA upstream 767841 7759369 ~ 7759597 (+) True G148961
TU187384 lncRNA upstream 843341 7683878 ~ 7684097 (+) True G148919
TU187283 lncRNA upstream 1202987 7313907 ~ 7324451 (+) True AMCG00000215
TU187229 lncRNA upstream 1434978 7092025 ~ 7092460 (+) True G148791
TU187549 lncRNA downstream 22077 8572936 ~ 8575124 (+) True AMCG00000251
TU187552 lncRNA downstream 32789 8583648 ~ 8584007 (+) True G149055
TU187553 lncRNA downstream 33629 8584488 ~ 8584967 (+) True G149056
TU187556 lncRNA downstream 118121 8668980 ~ 8673786 (+) True G149059
TU187686 lncRNA downstream 462512 9013371 ~ 9016151 (+) True G149172
AMCG00000250 mRNA upstream 2214 8519864 ~ 8525224 (+) True AMCG00000250
AMCG00000245 mRNA upstream 43741 8473574 ~ 8483697 (+) True AMCG00000245
AMCG00000248 mRNA upstream 70150 8442303 ~ 8457288 (+) True AMCG00000248
AMCG00000247 mRNA upstream 100802 8424584 ~ 8426636 (+) True AMCG00000247
AMCG00000232 mRNA upstream 407333 8108618 ~ 8120105 (+) True AMCG00000232
AMCG00000244 mRNA downstream 16608 8567467 ~ 8569670 (+) True AMCG00000244
AMCG00000251 mRNA downstream 22161 8573020 ~ 8574704 (+) False AMCG00000251
AMCG00000249 mRNA downstream 29667 8580526 ~ 8585273 (+) True AMCG00000249
AMCG00000252 mRNA downstream 35045 8585904 ~ 8587355 (+) True AMCG00000252
AMCG00000256 mRNA downstream 352048 8902907 ~ 8906396 (+) True AMCG00000256
TU187300 other upstream 1164731 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 1164731 7361020 ~ 7362707 (+) True AMCG00000217
TU187266 other upstream 1230774 7290666 ~ 7296664 (+) False AMCG00000216
TU187550 other downstream 28858 8579717 ~ 8581112 (+) False AMCG00000249
TU188032 other downstream 1418465 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1983731 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 3431601 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 4128811 12679670 ~ 12727903 (+) True G149859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000316_01128967_01178692.mRNA True 4240 mRNA 0.52 34 CI01000316 1128906 ~ 1178692 (-)