RNA id: AMCG00001585


Basic Information

Item Value
RNA id AMCG00001585
length 2750
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00001585
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8374285 ~ 8377410 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCTTGATTTTATAGCAAGCGAGCCATCTGCACCTGGAAGAAGAGCAGCGCACACTTTGGCGAAGCTATGTCGTCCGCGGCGGTCGCTGCTTCCAGGAGGCAGTCGTGCTATCTGTGCGACCTGCCCCGCATGCCGTGGGCTATGATCTGGGATTTTACCGAGCCGGTGTGCAGGGGATGTGTCAACTACGAGGGAGCGGACCGCATCGAGTTTGTGATCGAGACCGCCCGCCAGCTCAAGCGGGCTCACGGCTTCCAGGAGGGCAGGTCGCCGGGGCCGGGGAAACCTCAGCTCCCGGGGAAGGAGATCCAGCCCCTCAACCACACGGCCGCGGATCCCGGATCTCGGCCGCCCCAGCCCTTGGATCGCTACCCCCTCGCCTCGGATCGACCGCCGCGACTGGGGCCAGAGTATCCATCCGGGAGGCAGGCGAACGGCATCCCGGTCCCGAACGGATTCCCCAAACCAGATGACCCCCCGGAGCTGAACAGGCAGAGCCCCAATCCTCGCAGGACTAGCACGGTCCCCCCCAACTTGGTGCCTTTGGGTAACGGGAGCATGGCCCCTGTGCATGCGGTCAATGGCAGATCGGCACAGATGGGCATCCCGGCGGCGCTGACCAGCCAAAGCGAGATTAGTAGCAAACGGCCAGCCTCTGTGTCCAGCACGGAGCATGAGCGGGAGATGAAGGACAAGCACCGGGCGGACAGCTTGTCGGAGCTCGCTGAGAGCCACAAGAACCGGGGAGAGGAGTGGATGGGCAAGGGGAAGACAGTGAGGGACTTAATGGCTCTGCACACTTTCGACAGAGGCTTCAAGAAGGACCATCCAGCCATGCCACAGGGCAGGGTGATGGGGTATGATACCAGCGCCACAGCGTCCAAACCAGACAGAGGAAAGCACCCCAGAAACATGAAGAGAAAACTGTCGCCAGAGCATGAAGGAGAGAGCACAGCTGTGAAGATGAACGGCGAGGGTCAGCAGTGGCCCCCAGCGCCCGCTGAGGTCCTGAAGATGCCCAGCGTGCCCCCACCGAACTTTGCCACGCCGCCTTCCACGATATCTCCCCATTCCAACCGCACCACCCCGCCAGAGTCAGCTCAGAATGGCCAGTCCCCCATGGCAGCCCTGATCTTGGCAGCAGACAATGCGGGGGGAAACAGTTCGCCCAAGGATGCCAACCAGGTGCACTCGACCACCCGGAGGAACAGCAACAGCCCCCTTTCGCCATCATCCATGAACCAAAGGAGACTGGGTCAGAGGGATGCGTCTGGCGGAGGCACGCCACACGTGCCCAACATGGATCAAGTGCACCCACAAAGCATTCCAGACTCTTCTGTGCCCAGCAGCATTCCCCTGTGCTGCACCCTCTGTCACGAGCGTTTAGAGGACACGCATTTCGTACAGTGCCCTTCAGTGCCATCACATAAGTTCTGCTTCCCGTGTTCAAGGGAGAGCATCAAGCAGCAAGGTGCTACCGGGGAAGTGTATTGTCCCAGTGGAGAGAAATGTCCCCTCGTGGGCTCCAATGTACCGTGGGCTTTTATGCAAGGTGAAATAGCCACCATTCTTGCAGGAGATGTCAAAGTAAAAAAGGAGAGGGACCCTTGATTTTACTAtggtttttaaaaaaacaaataaaaaaaaacaaattataaatatatataaatataaattacatgcaTACCATCCAAACAAAACTAATGGACTTGTACATATTGGACGCAAGGGAAGTGTATACTTCATAAACATGGCTGTATAATTTTTGATTTTTGAATACATTGTGTTTCTATATTTTTGAAGATAAAGGTATGTACTCATTATAATGGACTacttttccccccctttttttttgttgatgtttaaGCAGAATTTCTTGATGTACTTTTAGGTCTGGTGGCAGTTCCTGTTAAACGTAGAATGTGACTAATGCTACTCTACGAGCACTTGGCAAAACTGAAATGCTTCTAGCTGTACTTGTATgcacttgttaaaaaaaattgccAAATACAATTTCTGACCTTGTAATAATAACTTAGTGTCTGTGATTGCTTATTTTTCGTAATCAGTAAAGCCCTAGGGAGGTATGCCCTGTCGATAATGAATCACTGAAGGCAGTGATGCAATTAGTGCAGAGGAGAGCGAGGatataaacaaaaagtaaatatgaGTTGCATTGCATGTTTTTAGTGAACATTCAGCCTCACATATGTCAGTATTAAAGTGCATtgtggtaaaaacacatttttctaatTGACATCTTGCTGAAGATCTTTTGTTACAACAATCctgtttaaaactttaaatcatTTGCATTGTGGTGAAGAGAAGGGGCTTTGCAGAGGTGTAACAAAATATGTAGACTATGACCATTCAGTTCCTCTGACCCGTAAACAGATCAGTGCTGTGGAGTAAATAGGCTTGACATATATACGTCCTGGTTGCTGCATTGTGACATCTTCAGATGAGgttaatcattcattttaaagttgTCCACACCCACAGTGGTTGTCAGGGTCAGGTACAGTATGGTACAATGGCCCACAATGCCCAGGTATTGATGGTGCCCAGTTGAGTTAGCTATAGGTGGGGTGGTTTATATTTACAATGTGaacctgtgtttttaaatgagaaacacaacAATACAGGACGTACcaacaaaagtttaaatataaataacacttCCTATGTCACTGCTTTGATCAGGCTATCTGATGCATGTGGAGATGgtgcaataatacattaaag

Function

GO: NA

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200005 lncRNA upstream 69445 8302550 ~ 8304840 (+) True G158857
TU199985 lncRNA upstream 117096 8165773 ~ 8257189 (+) True G158837
TU199968 lncRNA upstream 271870 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 335744 8035301 ~ 8038541 (+) True G158788
TU199909 lncRNA upstream 374573 7997910 ~ 7999712 (+) True G158771
TU200229 lncRNA downstream 399527 8776937 ~ 8777745 (+) True G159041
TU200303 lncRNA downstream 832710 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 938701 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 1485550 9862960 ~ 9863228 (+) True G159170
TU200388 lncRNA downstream 1491758 9869168 ~ 9869603 (+) True G159169
AMCG00001588 mRNA upstream 58933 8311527 ~ 8315352 (+) True AMCG00001588
AMCG00001586 mRNA upstream 64553 8305865 ~ 8309732 (+) True AMCG00001586
AMCG00001587 mRNA upstream 71815 8273664 ~ 8302470 (+) True AMCG00001587
AMCG00001582 mRNA upstream 158515 8209300 ~ 8215770 (+) True AMCG00001582
AMCG00001589 mRNA upstream 220075 8150133 ~ 8154210 (+) True AMCG00001589
AMCG00001600 mRNA downstream 163953 8541363 ~ 8567956 (+) True AMCG00001600
AMCG00001602 mRNA downstream 193274 8570684 ~ 8575017 (+) True AMCG00001602
AMCG00001599 mRNA downstream 229244 8606654 ~ 8631461 (+) True AMCG00001599
AMCG00001606 mRNA downstream 282117 8659527 ~ 8665661 (+) True AMCG00001606
AMCG00001605 mRNA downstream 361062 8738472 ~ 8740022 (+) True AMCG00001605
TU199983 other upstream 212470 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 440730 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 627305 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 636395 7736515 ~ 7737890 (+) True G158672
TU199732 other upstream 694502 7671314 ~ 7679783 (+) False AMCG00001550
TU200393 other downstream 1535898 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 3952578 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 5892205 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 6954210 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 7054927 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013327 True 1001 mRNA 0.59 2 NC_007124.7 49443226 ~ 49444636 (-)
grasscarp (Ctenopharyngodon idella) CI01180000_01366302_01368307.mRNA True 1870 mRNA 0.58 3 CI01180000 1366263 ~ 1368806 (-)
striped catfish (Pangasianodon hypophthalmus) TU210116 True 2268 lncRNA 0.55 2 NC_047605.1 7434137 ~ 7436825 (+)