RNA id: AMCG00001599


Basic Information

Item Value
RNA id AMCG00001599
length 5128
RNA type mRNA
GC content 0.47
exon number 17
gene id AMCG00001599
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8606654 ~ 8631461 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGTCTTGTTGTGCTTTGGCTGCAGGCGCAGATTGCCTTCCTGCAGGGCGAGAGGAAGGGCCAGGAGAACTTGAAGAAGGACCTGGTGCGGAGGATCAAGATGCTCGAATACGCACTGAAGCAGGAGAGGGCAAAAtaccataaattaaaatatggaaCAGAATTGAATCAAGGAGACATGAAACCTCCCAGCTATGACTCAGATGAGGGGAATGAAAATGAGAACGAGGTGCCACCCCCCCTGAACAGCCAGATATCCTGGAAACAAGGGCGACAGCTCCTCAGACAGTATCTGCAAGAGGTGGGCTACACAGACACCATCCTGGATGTGAAGTCTCAGCGGGTGAAAGCTCTGCTGGGTCTGGCTGGGGACGCTGGGGAGAGACCTGCCGACAAGAACCCAGAACCCATGGTGAACGGTACCGAGCCCTCCCTGAAGGGCTCCATCATGATTGGGAAACCCGATTTGACAGACTCGGCTTCTGTGCTGGAGGCCTTTAAATTCATAGAGAGCGCTGCTGCGGAGTTCAGTGACGAGGATGACGACGAAGACAGCGAAGGGAAAGACAAGACCATTATCGACTCCGCGACAATTGTGAGGAAGAAGGTGTCCGCCTCCCCGTCGTCTTCCTCAGACATCAGCGACGACCCGGACACCGAAGAGGCGCTGAAGGGCTTCGACTTCCTAGCCAGCTCTGAAGAGGTGGACGGTTCTCCGGAGTCCAGGAGTGCGGGCGACGGCACAGACTTGGAGAAGGAAGAGCAGTGTCCCATGCCCGAAGCCTGGGATGTGGACCAGGGCTTGATAACCAAACTCAAGGAGCAGTACAAAAAGGAGCGCAAGGGGAAAAAGGGGGTGAAGAGACCTAACCGTTCAAAGCTGCAGGACATGCTGGCGAATCTGAGGGATGTGGAAGACTTGCCCCCCATGCAGCCCTCCGTCACTCCCCCTGCAAGACCTAGCATCCCCAGGCTCAATGAACATGAAGTCAACCGCACAGAAGAAGtgGAGGCTATGACGTTCCCCCCCACGTCGGGGAAGTCGTTCATCATGGGCGCAGATGAGGCGATGGAGAGCGAGCTGGGCCTGGGAGAGCTGGCGGGCCTCACAGTGGCCAACGAGGCCGACTCCCTGACGTACGATATCACCAATAACAAAGACGCCCTGAGGAAGACCTGGAACCCCAAGTTCACGCTGCGGAGCCACTTTGATGGCATTCGGGGCCTTGCGTTCCACCCTGTGGAGCCGGTTTTGGTCACGGCCTCAGAGGACCACACGCTCAAGATGTGGAACCTGCAGAAAACGGCCCCTGCAAAAAAGAGTACCTCCCTAGATGTGGAACCTATTTATACATTCAGGGCTCACAGGGGCTCGGTGCTCTGTGTAGTCATGAGTGCCAACGGGGATCAGTGCTTCAGTGGAGGCGTTGACGGGACAATCCAGAGCTGGAATACGCCAAACCCCAACATCGACCCCTACGACTCGTACGAGCCGTCCGTGCTGCGCGGGGCGCTGTGTGGACACACGGACTCTGTGTGGGGTCTGGTGTACAGCGCGGCTCACCAGCGGCTGCTGTCCTGCTCCGCCGACGGCACCGTGCGGTTGTGGAACGCCGCCGACACGTCTCCCGCACTCACCGTCTTCAATGAGAACAGAGAGCTGGGCATCCCCTCGTCTGTGGACCTGGTCTGCAGTGAGCCTGCACACATGGTGTCATCCTTCAGCAGCGGACAGACTGGGATCTTCAACATGGAGACACGGCAGTTGGTCCTCAATCTGGAGTCGACAGGGGAGACCGGTGCTGCTTGCCAGATCAACAAAGTGTTAAGTCACCCGACCCTCCCGATCACCATCACAGCGCTGGAGGACAGACGCATCAAGTTCTTTGACAACAACACAGGAAAACTGATCCACGCCATGGTGGCCCATTTAGATGCGGTTACAAGCTTAGCTGTCGATCCCAACGGATTATACCTGATGTCTGGCAGCCACGACTGCTCGATCCGCCTGTGGAACCTGGAGAGCAAGACCTGCATCCAGGAGTTCACGGCCCACCGCAAGAAGTTCGACGAGTCGATCCATGACGTAGCGTTCCACCCATCCAAGTGCTACATCGCCAGCGCCGGGGCCGACGCACTGGCCAAGGTGTTTGTATGACGCAGCGCTCCTCCCCAGCCCTCCGGCCCCCGCAGCGCTGAGTGGCCACACCGGGCGCCTGGGACCGGCAGAGGGGACGGTGGGACGGGGCCCAGAGGGGGGGATCTGTCCACCCCGCCGATCTGCTCTGTCCCTCTCGGCTCCCTGTTGGCTCTCCTACTGGACTTCCTCAGACTAGCCCTGGCTCGGCGCTGGACAGGGGTGCGGGGGCCCTGTAGCTTAGCTTGCCCCTGACGAAGGAGCTGCTCTTGGAGCTGGGCTCTACACCCACACATCCAGGCAGGCCTGGGTGGCACTGGGCACGTTGTAAATTGAGTGAAGATAGGAAGGAACTGTTCTcgatcaaaaacaaaacaaggaaaacgGGGTGAGGCGAGATTTTACCTTAGGGGTtccacagaggaaaaaaaaaaaaaaaaaaaggagaattgTCCTCCAGCTAGTTACCTGTTGTGTGCTTCTTTTCATGGCTTAAAAATCTTTCCACAAAGGTGAAACGGTCCTTTTTTGAAgcaattgttgttgttgttcagaaACACGAGAAAGGCGTACTCCGCTACGCCCGTCCGGGAGCTGCGGCCTCCGTCTGCGCCCCCGATGGTCTGCCTGCCTtcgctgttttgtttttagaccTTTGTGAAAATGTGCCTTTGCTTCAAAATAGGGCCCCCGAAtataaaacagtacagtacagtatatattattttacgaAGCCATTATTGGGTTATGGCGGTGTCAGgttttaaaagatcttggatgtacaatgaaaaataatattaataaataaaaaaacgcaTATATTACATCTTACACCTTAAACTAAagtctgaattattttttttctttcagcagcaggaatttttgtaaaataaattgcaaaacaaTAGCTCTCTAGCCTCTTGCATGGCGTTAGGTGAACGAAGGGTGTCTTTATGTGTTTGGAAAAAGAACTCCAGATGCAAGTCCTCAGTTTTTCAGTTGTTCTTTCTCCTTTGTTTGAAATTTGGTCCTATGAAACTGATTCAGAAAGAGATGAGTGAGTGGCAAGGGCATTTTTAGTGGTACATGTTTATAGGGTTAAATCTAAACAGATCTAGACTTTCTTGTAGAGATTTatggttttatattaatatatgaactagtttttgttttttcacattaaGAAAATATTCACGACCACGTTGGCTCTTCCCGAGTGGTTTCATTTATCTGCCGTGTGAATCATGCAGAGTGTGCCAGTGATAAAGCTGATGTACCTACTGTATCCAAAACGTAAAAGCCGTGCTGGGCAAAATAACTAGGAGCCTGACAGTAAATTGCAATCAAATCTGCCTTAAAAGCCAGCATCCGATTAGTGTAActtgtatttcatttgattGATGTGAATGGTTTCCCAAGAAATCATGATATGACATAACAAtgtcaacaaacaaacaatatatataaattaacaaaactatGATAGATGTTTGCCGAAATGCTATATTTGCATGACTACAgttcaaattgattttttttttgttttttaatcgttttatgatgatgatgtttggTTCTTGCGCACCTTGCCCTTTGAGGACACAAATGTAAAGGTTACAGAAATTCTGTGTATGATTTGTGGGTGTACCCAGTGGACAGAGCCATTTCTATATATAAGGAGAGATGTAATGTCATGTGAAGtccaataaaataattgtagtcATGCGACTTTTAGCACAGCCCAAGCAAAGTATggttattttattacacttaaGTTTGTGACATTGTGAAGCATCCACCTTCCAAGTGTTATAATCATTACAGTTCACACAAGTCCCCTCTGAAACAGTACTCCTTTCTCCTCGCCCTCAGACAAACTGCATTAGGAGTAGCTTGCAGTGataaaagcttttgtttttcttctttagttgtatttttctttgaattCTCTAAAGCCAAAATGATTCAGAAGCAGCTACGGCGTACGATTTGAACATCTAGGATTGTCTCAAGGGTTCCTTCTGCAGATATAGGGAGGTGGCGGTGCCTAAAAAAACAAGGGAATTGTTGTGAAGGTGACGCCTACAGTCCATATAgtacagacagaaataaaaacatgtaaaagagAATCTGTAGAGCACAGATACTTGCACACAGACTTACACTCCAGCTTTGGAGTGGTGTATATTTAttctgttatatatttaaatttaaatttaaatatacacactgaccttttttttttattattatttttgcaataatTGGGGGCATAAATCTAtataagtatgtatttttttattttttttttaggtgttgAATTTTGTCTCAATATATGGGTCTTAAGGTGCATTAACATCCATATTGTGAATGTCTGATTCTTTACAAACAagcatgttttatttgcattttacttgcatgtataatgtaaataaaactttgcggttatatattgcaaatatatatataaattcctTCTATTTTGCATCCCTCTTTATCCTAGACCGAGGGGAATCTTCGGCTACTAACATCTTCTATATTAACAGCTTCAGTGAGTTGGTGTAAAGAAAGAACAACGTTATATTTAATTCAAGTGTAATGGATCAAGGTTTTTTATGATATTTTCTGCGATTACTTGAAGAAAGTGATTCTTGGAGGTGCTTCTTTGGTCAAAGGTTTCTCTCCTGGTTTATGATGGCAATTCCCCTCATAAAGGCGAGAAAGCGATCCCAAAAACCAAGCACGTAGGACAGCCCCAGGTCGTTCATTTTGGACAGCTCACAGCCAATCAGGAGGCACAGGGAGATATTGCTGTTGCCGTTCTGTCTAAATGTTACCCGTCAGACAGCTCTTTAGCGTCATCAGTCTTTTTCCTCAGTCCAGGAATGCTGGGAATTGGGGGGGACTCTTCTCTGTttgcatattcatatattttggtGTTTGGTGCATCAAttataaaagataaatataaatatatatataaatatat

Function

GO: NA

KEGG:

id description
K17608 STRN1_3_4; striatin 1/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200005 lncRNA upstream 301814 8302550 ~ 8304840 (+) True G158857
TU199985 lncRNA upstream 349465 8165773 ~ 8257189 (+) True G158837
TU199968 lncRNA upstream 504239 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 568113 8035301 ~ 8038541 (+) True G158788
TU199909 lncRNA upstream 606942 7997910 ~ 7999712 (+) True G158771
TU200229 lncRNA downstream 145476 8776937 ~ 8777745 (+) True G159041
TU200303 lncRNA downstream 578659 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 684650 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 1231499 9862960 ~ 9863228 (+) True G159170
TU200388 lncRNA downstream 1237707 9869168 ~ 9869603 (+) True G159169
AMCG00001602 mRNA upstream 31637 8570684 ~ 8575017 (+) True AMCG00001602
AMCG00001600 mRNA upstream 38698 8541363 ~ 8567956 (+) True AMCG00001600
AMCG00001585 mRNA upstream 229244 8374285 ~ 8377410 (+) True AMCG00001585
AMCG00001588 mRNA upstream 291302 8311527 ~ 8315352 (+) True AMCG00001588
AMCG00001586 mRNA upstream 296922 8305865 ~ 8309732 (+) True AMCG00001586
AMCG00001606 mRNA downstream 28066 8659527 ~ 8665661 (+) True AMCG00001606
AMCG00001605 mRNA downstream 107011 8738472 ~ 8740022 (+) True AMCG00001605
AMCG00001603 mRNA downstream 116835 8748296 ~ 8758510 (+) True AMCG00001603
AMCG00001604 mRNA downstream 131660 8763121 ~ 8774091 (+) True AMCG00001604
AMCG00001610 mRNA downstream 173860 8805321 ~ 8815317 (+) True AMCG00001610
TU199983 other upstream 444839 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 673099 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 859674 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 868764 7736515 ~ 7737890 (+) True G158672
TU199732 other upstream 926871 7671314 ~ 7679783 (+) False AMCG00001550
TU200393 other downstream 1281847 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 3698527 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 5638154 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 6700159 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 6800876 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007222 True 6099 mRNA 0.43 18 NC_007122.7 44804685 ~ 44855209 (+)