RNA id: AMCG00001588


Basic Information

Item Value
RNA id AMCG00001588
length 1452
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00001588
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8311527 ~ 8315352 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGGTGGAAAGACGAGCGCCATCGCCGCGGGGGTCTGCGGGGCCATTTTCATCGGCTACTGCATCTACTTCGACAGGAAGAGACGGAGTGACCCCAACTTCAAGAACCGATTGCGGGAACGAAGGAGAAAGCAGAAACTGGCAAAGGAGAAAGCTGGCCTTTCCAGGCTGCCAGACCTTAAAGATGCTGAAGCAGTCCAGAAGTTTTTCCTTGAGGAGATCCAGCTGGGAGAGGAGCTACTGGCACAGGGAGACTATGAGAAGGGTGTGGACCACTTAACGAACGCCATCGCGGTGTGTGGTCAGCCACAGCAGTTACTGCAGGTCTTGCAGCAGACCCTGCCCCCCCCTGTGTTCCAGATGTTGCTCACCAAACTGCCCACCATCAGTCAGCGTATCGTCAGCGCACAGAGTCTGGCAGAAGATGACATCGAGTAGCAGACGCCCCAACACCCCGGGCAGACCGTGGCCCCGAGTCCCAGGACCTCCCTCCAGCTCCACCCCGGCTGCCCTAGGAGCCTGGAAGCAGAGGGTAGCTTCGGTTCTAGCAAaaaccccaacacacacacacacccctgcaAGGAGCCTCCTTTTTGTAACTCGTCCAGCTAGATTTGAttcttggttttatttattatttctcccGCCACCTGTATTTTGATACTTCCTGTCCGATTCGAACGAGTGCTTGTGCCCCCCCATGTCCAGCCGCGTCTTATGTATCTGCGGACGATGTGTACGGCCACATCATCACGGAAGAGTCACGtgtaaaagcaacaacaacacaacgtGCACATGCCACATGTACCCACATGAATACAGGCCTACTTCGCATTTGGAAATACCTTGGATATCattaaaaactacaaacaaacgTCACATTTCTTTTGTATTCCTCTTTCTTGGTTTCTTGGTCTTTTCACAGCAGAGTACAGGGGCTGTGGGAACGACAAAGTGGTTTTCCATTCATGGTCCTAATTTGTCATTGCTGTGGCATGAGCAGATGTTTACTCACCCACCtagctttcaaatgtaaattgcaTTCATTCAGACTGACAAGACCACTCAGAGAATGCAGATGATGGGTTATGTAATACTTCCATTACACACCAAATGTACTCAGTTCAATTACACTAAGAACAAGTGCTTATGAAAGCTAAACTGTTTATGAAGTTATAGTAAAATCTGTACtatttgctttttacattttttatatttctgaattCTACAACTAAGCTGTAGTTACTTATTTTTCAGATGacaattaaatactgtattttttctcttcatacTTCATTTACTCGaagtgtgcatgtttttttgttttccttccaataaatccattcaaataaaatgagaaaatgagaAACGCAATGGTGAGGTGTAAAGTTATTTAGTCTACTTTCCCCTCCTCATCTCTTGCAGGGTTTGGCAAATTGTAAAACCTCA

Function

GO:

id name namespace
GO:0006605 protein targeting biological_process
GO:0005742 mitochondrial outer membrane translocase complex cellular_component

KEGG:

id description
K17770 TOM20; mitochondrial import receptor subunit TOM20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200005 lncRNA upstream 6687 8302550 ~ 8304840 (+) True G158857
TU199985 lncRNA upstream 54338 8165773 ~ 8257189 (+) True G158837
TU199968 lncRNA upstream 209112 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 272986 8035301 ~ 8038541 (+) True G158788
TU199909 lncRNA upstream 311815 7997910 ~ 7999712 (+) True G158771
TU200229 lncRNA downstream 461585 8776937 ~ 8777745 (+) True G159041
TU200303 lncRNA downstream 894768 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 1000759 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 1547608 9862960 ~ 9863228 (+) True G159170
TU200388 lncRNA downstream 1553816 9869168 ~ 9869603 (+) True G159169
AMCG00001586 mRNA upstream 1795 8305865 ~ 8309732 (+) True AMCG00001586
AMCG00001587 mRNA upstream 9057 8273664 ~ 8302470 (+) True AMCG00001587
AMCG00001582 mRNA upstream 95757 8209300 ~ 8215770 (+) True AMCG00001582
AMCG00001589 mRNA upstream 157317 8150133 ~ 8154210 (+) True AMCG00001589
AMCG00001590 mRNA upstream 167645 8124004 ~ 8143882 (+) True AMCG00001590
AMCG00001585 mRNA downstream 58933 8374285 ~ 8377410 (+) True AMCG00001585
AMCG00001600 mRNA downstream 226011 8541363 ~ 8567956 (+) True AMCG00001600
AMCG00001602 mRNA downstream 255332 8570684 ~ 8575017 (+) True AMCG00001602
AMCG00001599 mRNA downstream 291302 8606654 ~ 8631461 (+) True AMCG00001599
AMCG00001606 mRNA downstream 344175 8659527 ~ 8665661 (+) True AMCG00001606
TU199983 other upstream 149712 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 377972 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 564547 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 573637 7736515 ~ 7737890 (+) True G158672
TU199732 other upstream 631744 7671314 ~ 7679783 (+) False AMCG00001550
TU200393 other downstream 1597956 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4014636 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 5954263 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 7016268 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 7116985 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile