RNA id: AMCG00001591


Basic Information

Item Value
RNA id AMCG00001591
length 7798
RNA type mRNA
GC content 0.49
exon number 42
gene id AMCG00001591
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8053483 ~ 8094300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGCACCTCCCAAAGCCCGAGCACCATGACCGGGATGGCGTCTACCTTAGCCAAGAAGCGGGCGCTGGCCGCGGGTTTCGGCAGCAACTCCAACGCGGTGAAGCACCTGAACCAGGACTACGAGCAGCTGCGGCGCCAGTGCCAGAGCCAGGGCCAGCTGTTCTGCGACCCCAGCTTCGCGGCCGCCCCCGAGTCGCTGGGCTTTAAGGAGCTGGGGCCGTCTTCGTCCAAAACCAGGGGTGTCAAATGGAAAAGACCCGGAGAACTGTGCTCCAATCCCCAATTCATCGTTGGTGGAGCCACAAGAACCGATATCTGCCAGGGGGCTCTTGGTGACTGCTGGCTCCTGGCTGCTATCGCTTCTCTCACCCTCAATGAGGATGTCATGGCCAGAGTGGTTCCCAGTGATCAAGACTTTGGAAATGGCTACGCTGGGATCTTTCACTTCCAGTTCTGGCAGTTTGGAGAATGGGTGGATGTTGTCATTGACGACCGGCTGCCCACTAAAGACGGAGAGCTGCTGTTCGTCCACTCAGCCGAGGGCTCTGAGTTCTGGAGCGCGCTGCTGGAGAAGGCCTACGCCAAGGTCAATGGCTGCTATGAGGCCCTGTCTGGAGGCTCCACTACTGAAGGCTTTGAGGATTTCACTGGAGGGATCTCTGAGACGTACGAGCTGAAAAGCGCTCCCAGCAACCTCTTCAACATCATCAAGAAAGCCCTGGAAGCTGGCTCTCTACTGGGATGCTCCATTGATATCACCAGTGCTGCCGAGACTGAGGCCGTCACCTATCAGAAGCTGGTGAAGGGACACGCCTACTCCCTCACAGGTGCTACGGAGGTGACCTACCGAGGACGCCCTGAGAAGCTGGTCAGGATTCGTAACCCCTGGGGGCAGGTGGAGTGGACTGGGGCCTGGAGTGATGGGTCTTCCGAGTGGAACAATGTGGACCCGTCACAGCGTCAGGTTGTCAAAGCAGAAGATGGAGAGTTCTGGATGTCTTTCACGGAGTTCTTGAGGAATTACTCCCGGctggagatctgcaacctgactCCGGACACCCTGACCAGTGACTCCTACAAGCGCTGGAGTGTGTGCAACTACGACGGCTCCTGGAGGAAGGGCTCCACCGCGGGGGGCTGCCGGAACAACCCCTACACCTTCTGGATGAACCCCCAGTACGTGATCAAGCTGGAGGAAGAGGACGACGACCCCGATGACAATGAGGTGGGCTGCAGCTTCGTGCTGGGTCTGATTCAGAAGAACCGCCGGCGACTGAGGAAGTCGGGAGAGGACATGCACACCATCGGATTCGCCATCTACGAGGTGAGGAGAGATAGGAGGCGTGTGAGGTGGGATCGCTCGGCTTTTATGCCCACCAAGTGTTTTAAGATGAATTCAGCCGCAGTGCAGTCAAGATGTGCTGGTCTAACCTCTGTGCGTCTTGTCTGTTTCAGGTTCCCCCGCAGAAATGACCTGTATGTCAAATTTCTGCATTCTCCTAATTTCCGAGGGCAGAGGGAGGTCCACCTGGACAAGAACTTCTTCCTGACGCACGCTCAGACGGCCCGCTCCGAGACCTTCATCAACCTGCGTGAGGTCAGCACGCGCTTCAAGCTGCCGCCCGGAGAGTACCTCATCGTGCCCTCCACCTTTGATCCGCACCTGAACGGGGACTTCTGTCTGCGCTTCTTCTCTGAGAAGCAGACCGAGGCAGTACACTGTGAAGATCCCATTAAGGCCGACCTGAGTGATGAAAAGGTTTCTGAAGCTGAAGTTGATGTGGGATTTAGGAACTTGTTTGCGAAGCTCACTGGAGCGGATATGGAAATTTCTCCACCAGAACTGAGAACTATTCTGAATAACATCGTCTCCAAACGTGCTGATATAAAAACAGATGGCTTTAGCTTGGAGACCTGCAGAGTTATGGTCAACCTCATGGACGATAGTGGCAATGGCAAGCTTGGAATGGGTGAGTTTGCCACACTGTGGAAGAAGATCCAGAAATACCTGTCCATCTACAAGAAGAATGACATGGATCAATCGGGCACTATGAGTACTCCAGAGATGCGAATTGCCCTGAAAGATGCAGGCTTCACCCTGAACAACAGCCTTCACCAAATCCTCGTCGCCCGCTATGCCGAAACAGACATGACCATCGACTTTGACAACTTTGTGGCCTGCTTGATGCGTCTGGAAACCATGTTCAgAGTCTTTAATAAGGTAGACACTGGAGGCACTGGGAGCATCGAGCTCGACTTCTTTCAGGTAAGACATCCACCCACGTGTTTCAACAAGGGTCCCCCCCCAAACAAAGCCGCCCCTCCCCCctgggcagggcagggcagagaCTGCAGTAACACGGGCTGCTGGGAATGCACCCCCCATAGGAGCTTCTCTGTGCACATCCTCCCCGAAACAACACCCCAGCAAGGCCACAGCGTCGGCGGGAGCAGGGGAACAGGGTCCGGTGCACAGTGTATGTTTCAGTTTGGAGGAATCTCTGCTCGCATACACAAGGACAGGCTGAAGGCAGAAGGGATGGGATCCAACGAAAAGGCTTTGAAATTCCTCAGCCAGGACTATGAGGCGTTGAAGCAGGAGTGCATCGAGAGCGGCTGTCTGTACGAGGACCCCATCTTCCCAGCCGAGCCCTCCTCGCTCGGGTTCAAGGAGCTGGGACCCCACAGTTCCAAAACCAGGGGGGTGGAGTGGACGCGGCCCACGGAGCTCACAAGCGACCCACAGTTCATCGTCGGGGGTGCTACCAGGACAGACATCTGCCAGGGAGCGCTGGGTGACTGCTGGCTCCTGGCTGCCATCGCCTCTCTCACCCTCAACGAGACTCTGCTCCACAGGGTTGTCCCTCATGGACAGAGCTTCCAAGATGACTATGCCGGCATCTTCCATTTCCAGTTCTGGCAGTTCGGAGAGTGGGTGGACGTGGTGATCGATGACCGACTGCCGGTGAAAGACGGAGAGCTGCTCTTTGTCCACTCGGCAGAGGGCAATGAATTCTGGAGTGCCTTGGTAGAGAAAGCTTATGCCAAACTGAATGGCTCGTACGAGGCGCTCTCTGGAGGCAGCACCACTGAAGGCTTTGAGGACTTTACAGGAGGCGTGTCTGAGATGTACGAGCTGCGCAAAGCCCCCAAGGATCTGTACAGGATCATCAGCAAGGCCCTAGAGAGGGGGTCTCTGCTAGGCTGCTCCATTGATATCACCAGTGCCTTTGACATGGAGTCGGTGACGTTCAAAAAGTTGGTGAAAGGCCATGCCTACTCTGTAACCGGGCTTAAACAGGTAGAATATCGTGGACGCACCGAGAGGCTGATTCGTATCAGGAATCCCTGGGGTCAGGTGGAGTGGACTGGGGCCTGGAGTGACAATTCTTCAGAGTGGAATGATATTGACCCATCTGAGAGAGAggatatgcatttaaaaatggaagatGGGGAGTTTTGGATGGCGTTCCAGGAGTTTCTGCGTCAGTTTTCCCGGctggagatctgcaacctgaccCCAGACGCCCTGAGCGACGATTCCCTCAGTTTCTGGAACACCATCAAGTTCGACGGCGGCTGGCGGCGGGGGAGCACCGCGGGGGGCTGCAGGAACCATGCCAACACGTTCTGGATCAACCCCCAGTATAAGATCACTCTGCTGGAGGAGGACGACGACCCGGAGGACGACGAGGTGGCCTGCAGCTTTTTGGTGGCGCTGATGCAGAAGAACCGCCGGCTGTACAGGAAGCAGGGCCAGGACATGCACACCATTGGGTTCGCCATCTACgagGTCCCAGATGAGTTCAAAGGCTGCCAGAGCGTGCACCTGAAGAAAGACTTCTTCCTGACCCACGGCTCGTGCGCCCGCTCCGAGACCTTCATCAACCTGAGGGAGGTGAGCTCCCGCCTGCGCCTGCCGCCCGGCGAGTACATTGTGGTGCCCTCCACCTTCGAGCCCAGCAAGGAGGCCGACTTCGTGCTCAGGGTGTTCACAGAGAAACAGTCTGACACACAagAACTGGATGATGACATATCCGCTGAACTTGAAGACGAgGAGGAGATCTCAGAAGACGATATTGACGATTCCTTCAAGAGTATGTTCGAGCAGCTGGCCGGCGAGGACTTGGAGATCTCTGTTCATGAGCTCAGGACCATCTTAAACCGAGTGGTGAACAGACACAAAGACTTAAAGACAGATGGCTTCAGTTTGGAGTCTTGCAGGAGCATGGTCAACCTCATGGATAAAGATGGCAGTGCCCGTCTGGGTCTAGTGGAGTTCCAGATTCTGTGGAACAAGATCAGGAAGTGGCTGGGAATCTTCAGACAGTATGATCTTGACAAATCTGGCACCATGAGTTCATACGAGATGCGTCTTGCTCTGGAATCGGCAGGCTTCAAGCTGAATAACCGATTACACCAGGTCCTCGTGGCCAGATACGCCGAAAACGAGACCATCGATTTTGATAATTTCGTCTGCTGTCTTTTCAAGCTGGAGGCCATGTTCAGATCCTTCCAGACTCTGGATAGAGACGGGACGGGTGTGGCTGAACTGAATATCACTGAGGTGACAGAAATTTACATTATGTCACACATTCCACAGAAAAGATCTCCGTGTTGTGTGGCTGTTGATGAGCATGTGTGGTTGAAGCCAGAATGCATCCAGCGGACGAAAATGAAGGGCCTGTGCATCCTGCAAGTGCCTCTCCCCTGAAGCTCCCCCCTAACTTCCTACTAACCAAAAGCGATATGCCTGTGTATTCCAAGAAGGGGTTCGAGTCAGCCCAGGCCTTATATTTTGTATCCACAATGCAGAAGCACGTCTGTGTACATTTACCTCTCTGCCTGAGTTCTTTTAACAACTATGCAAACATCAAAACATGCTGTCACAGAAGGGAAGAATTCaagttaatattatattaaaacagcAAGGTCCCATTTAAGATCAGAGCCTCTccgtgttttttgtttttgtcttttccgTTTCCATTTTAGTTTGCCGGCTACAAtctaaaatcagttttttttttttttttactgaatgttAGACTACAGGAACTTTAAGAAAGTTGTTTTGCCAGGTACACATGCCTGcaaagattaaagattaaattaacaGCATGAAAGTGCAGATCGCCATTAAAGACAAAACATGCACCCATATCTCACCACAGTTAATTAAGTAAAGGGTGACATGcagaaatgcatttacaataagAGATTTGGATTCATATTCTTGCTTGTGTAATGTCAACCTAATTGGTAATGGCatacaattatttgaataaattacttTGACACAggataacaaataaaacattaataagaaTCTAATCAACGCCCAAGCATAACAATTATTCAGAAATGACTGAGATACTAATCTAGAAATATGCTTCAACACTCATTATGAAATTTTGCCCTGACACAGTAGTCCTATTTCTCATTTCTGATGTGACCAGTAAAATGCAGCATTTAATGTTAAAGTAGATGACATACTTGTAGTGCACAATGAAGTACTATTTCCCTACATTATCCTCCgctattgttttaatttacttttgctACAGAAGGTTGTGATGCACCAGAGTAACCAATAGGTGGCAGAATTGTCCTTCCCCTATTGTTAACTTTTAGCTTGGGTTGAACAAGGTTACCATGATTTTATCCATGATAAATTATGAAAGTGTTCTTTTTCtgacttttgtttatttaatttccagaaaTTAACATTGTTAAATGATTCAATGAAAGCCATTTGTATATGATCATGAAGGCATATTTCAAACATACCAAATTACTTCTGGTATATGCAAGTTGAAGCAATATTAAGTCTGCAAATGCAATACAGCATGGTTActcatttaaaagcaatggaCCTTAGGCTAACTTCAAGAACACACTAAGGCTTAGATGCAGGAGTAAGTCCCATGTTCTCTTTAATATTATGCTAAAAAAAGCAAAGTCCTAGCATTCtttatagatttatattttaattcagttttaacaattcatatattgtttttggcAGCTAGAAACATGTACAGGATGTGTATCATTCCACCGATACTGTTTTGCCATTTAGGTTGCTCAAGGATCAATGAGGGTGTTCATAAAGCagttaaaaacattgcaaatccACAGAAATAGtcctatatattaaaacaaacaaaaaaggctttGGTCCAGCACATTCAGataactaaaaatacataaaattagTGATTTGGCAGTTTGTCTAGAAAAGTAATGTTTCTAAGATGTTTAATGCTGCTTATATTTAGCATTTGCTAAagacaaatcacaaaatatagTTAATACAATACTACTGCTTTTTCCTGCTATGTCTCATGTTTGCAGAAGACACCTGTGCTCCAATCCCCAATCATTGTGCTGCTGTGTATCAATGGCTTTGTTTTATTAGTGTCCTACACTTCTTGACTCTCATACTGAAGTGTTATTTTAGTTAGATCTCACCTTGCCTCACTACttgcttgcttttgttttcatgatcTATAAATaagtttcaaaaataaaataaggttgCAAACGTAAGGGAAAGGGTTTTTTACATTACTTTTCAGCATTATTTTTTCAGCAAATGTTTACACACCCCCTCCCTTAACTAAAACCAAGCAACTGGGATCTTTAGCTGTCTCTAGGCCTAATCcgcaaactctgaaaatattgaTACAGGGTGATTGATTTATGCAACATATTTATTCACCAAATGACATGGTTTAAAATGGGGGTGGATACATTTGCCCACTGCATGTTTAATGTGCGGTTTAGCACAAGTCTGACAATAAAGCGGTTGTGGAAACTGTGGTGTCCTCTTGTTATTGTGAGTGATGGGGACTCCAATATGCCCAACATGGGGATGGGGTGCAACACTGTCATGCAGCAAAAACAGTGGAGTTGTATCCACATAAATATAACTGACATAACAACCCAATACAAATGGGAAAAAGAACAGTTCAGTTTTTCTGACATACTTTAATCATCAACATATTTCTAACGCCGCCCTTATACAAGCTGTACAATAAGGGAATGGAAGACGTGCTAAAACAGCAGACTGATGGACATTTAAAGGACATTGACATTGGGAGATCTAATAGTTTAAGGCAAGTGGACATGATTGGGTCTCCACGTTGTCTTGCATACAGTAGTCAACGTCATGTACGAGATCCCCGGCGTTGCACTGTCCATTGTTTCCCCATGTCCATCCCTGCTTCACAACAGCCCCAGCAGAACAGCATCGGCCTCCAGCAGGGTCGTGTCCGTGTTTGCCCCCAGGAACCGGGACGTGAGCTCCAGATCCAGCAGCCTCAGTCGCACCCTGGTGCCCCGCTGGTACTTCTCCCCGTCCACGGCCGGCCGCTGGCACACACAGTGGAACTTGCCTCCGAAGTCGATGTACAGGTCGTCATTGACAATGTGGAAGATCTTGCCCAGGGCGACCTTGTCCTTGGCGGGACCCATCTGCATGAGCGGGGAGTGTCTCAGCAGGGACGGGAAGGACTTGGCGTCGACCGTCGGGGATGAGTGCCGGGCGGCTCGGTCGTGTTTCTGCTGCAGGTCCGAGTGCAGCTCGAACGCCGCAGCAAAGCCGGTTCTGGGCTTTTCAACCGCGGTCGCAGGCTTCTCCTTTCCCGCAGCATCCCCGCTATCACCGTCGGTGTAGTTTCGACCCAGTGTGTTACTTGTGAGGGGAATCCGTCTGGTTAACAGAGACACTCTTGAGCCCCTGCTGGATAAACGCACCGCTTTACACAAGGCAGCCATATTGTTGACCTCTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K01367 CAPN1; calpain-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199928 lncRNA upstream 14942 8035301 ~ 8038541 (+) True G158788
TU199909 lncRNA upstream 53771 7997910 ~ 7999712 (+) True G158771
TU199857 lncRNA upstream 117005 7936272 ~ 7936478 (+) True G158729
TU199856 lncRNA upstream 118194 7935074 ~ 7935289 (+) True G158728
TU199855 lncRNA upstream 118608 7933973 ~ 7934875 (+) True G158727
TU199968 lncRNA downstream 7151 8101451 ~ 8102415 (+) True G158823
TU199985 lncRNA downstream 71473 8165773 ~ 8257189 (+) True G158837
TU200005 lncRNA downstream 208250 8302550 ~ 8304840 (+) True G158857
TU200229 lncRNA downstream 682637 8776937 ~ 8777745 (+) True G159041
TU200303 lncRNA downstream 1115820 9210120 ~ 9214347 (+) True G159101
AMCG00001568 mRNA upstream 36063 8006435 ~ 8017420 (+) True AMCG00001568
AMCG00001567 mRNA upstream 57602 7976087 ~ 7995881 (+) True AMCG00001567
AMCG00001575 mRNA upstream 91106 7940134 ~ 7962377 (+) True AMCG00001575
AMCG00001576 mRNA upstream 124596 7923526 ~ 7928887 (+) True AMCG00001576
AMCG00001577 mRNA upstream 129989 7922768 ~ 7923494 (+) True AMCG00001577
AMCG00001592 mRNA downstream 332 8094632 ~ 8099017 (+) True AMCG00001592
AMCG00001590 mRNA downstream 29704 8124004 ~ 8143882 (+) True AMCG00001590
AMCG00001589 mRNA downstream 55833 8150133 ~ 8154210 (+) True AMCG00001589
AMCG00001582 mRNA downstream 115000 8209300 ~ 8215770 (+) True AMCG00001582
AMCG00001587 mRNA downstream 179364 8273664 ~ 8302470 (+) True AMCG00001587
TU199853 other upstream 119928 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 306503 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 315593 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 373700 7671314 ~ 7679783 (+) True AMCG00001550
TU199983 other downstream 64846 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 1819008 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4235688 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 6175315 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 7237320 15331620 ~ 15334567 (+) False AMCG00001760

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013224 True 2983 mRNA 0.46 22 NC_007124.7 42681393 ~ 42724645 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_06515001_06525964.mRNA True 2169 mRNA 0.50 18 CI01000030 6515001 ~ 6525964 (+)