RNA id: AMCG00002232


Basic Information

Item Value
RNA id AMCG00002232
length 6103
RNA type mRNA
GC content 0.44
exon number 24
gene id AMCG00002232
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7980304 ~ 8010540 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atAGGACATGACTGTGTCAAGCACTTACTTTGAATGGATCTAAATGGTGATGCTCTAGTGAAAGCCTATTCCTTGGGTTTGATGTCAGATTTAATGACACTGAAGTACCAGCCAACTGTTGCAGAATGCCACACAAGATAGGGTTTGTAGTGGTCAGCTCCTCTGGACACGAGGATAGCTACAGCGCCAAGGAGTTAATGGTTCACGCCCCTACTGTCAATGGATGGAGATCAGCTAGATTTTGCCTATACCCTCAGGAAATCACCATACAGCTGGTCGAGCGCTGCCGCATCAGAAAGCTCCAGCTGCTGGCTCACCAATACATGATCTCAGCGAAAATCGAGTTCCACATCAGCGACAGTCTGCCAGATTCCTTTTCACCCACTCAGTCCGGTAGCTTCCGCAGGCTAGGGTATGTCTCACTCTCTGACAATGAGAAAACGGGATTTAAAGCTCGGGAGCTGAAGTCTGTTCATGTGGATGCAGTTGGAAGCTACCTGAAGCTGACTTTCCACAAGAACCACGAGAATCGATACAACCTATACAATCAGgttgCATTGGTTGCTATTAATGTTCTTGGAGACCCAGTGGATGGCAAAGAAATGGATATCACTCCAACAAGGGATCAACTGATTGAACAATACCTCAACAGCACTCACAATGACATCTCCCTAGATGGAACTTACTTAAGTAAATCCGATTCCATTTCCCCATTGGATGACCTGGCATTCGATATGTACCAGGACCCCGAAGTGGCTCAGATCATCCGAAATCTGGATGAGAAAAAACAGGACGCTGTCCGTCAGGAGAGATACGACCTGGCCAAGAAGCTGAAGCAGGCTATCGCAGACTTACAAAAGGTAGGGGAGCGCCTGGGCCGTTATGAAGTTGAGAAACGCTGTGCAATCGAAAAGGAGGACTACGACCTGGCCAAGGAGAAGAAACGGCAGATGGATGAATACCGCCTGACAGTTTATCAGCAGATTGAGCTTCACAATTTACTTGATATGGGCCCGATTTGGAAGACAACCGAAATTTCTTTGGAACCTCCCGTTGCCATTTTCCCTCCTCAACAGGAAAAAACACGCGAGACTCCGCCCAGACGAAAAAAGCAAGAGAAGAAGCCAGAAAAGCCCCCTGAGCCTGAACACCCCATCCCCAAACCATCCACCCCACAGCGGACCCCAACACCCCCTCCACCCCGAGCTCCATCAGACGTACCCAAGATCGATATCAGTGCTCTGCCCTATGACGAGAGACCCCTGCCTGCTCTGAGGAAACAGATGGGGGAGCAGCAGAGCCAGCTGGAGGAGCCTCCCCCCCCAGACTCCTCCAGGACCCCCCGGAGCACAGGGATCACTGGGGAGCCAGAGCCACTGACAGAGAAAGCCCTGAGGGAGGCCAGCTTTCCCATAGAGGTGTACGGGGAGGGACTGGTGGCAGGAGCTTACTCGAAGACTTGGTCTTACCGTGAGGATGCGCTGTTGGCTGTGTATAAAAAGCTAATGGAGGCTCCAGCAGGAATGCCTAAAGACGATCTGAAATCCATGGTGCGCGCAGCTGTGTTTCTGGTCAGGAAGGGCCTCGTGGACAAGGTGTCATCAGTGTTTCAAGCCTCTCTGAAGCTGCTGAAGATGATCCTAACCCAGTTTATCCCCAAACACAAGCTGGGTCGAGTGGAGACCAGCCACTGCTTGGAGCGCACCTGGCCAAACCTGATTGCCAGAACTGGAGACCCTGCTACCCGCCTTCGCATTGCGGCAATGCAGTTCGTCCAGGAAATGGCCCTGTTTAAAGAGGTCAAGGCCCTGCAGATGGTGCCCACTGAGCTGGTGAAGACTATGAAGCCCAGCACGCCAAGCCGCCTGGCCCTCAGCCACGTGGAGCTGCTGGAGAAGCTGCTGGAGGATCTTGGCACGGACGGCTCCGGATTCACCCTGGACAATGTCATGCAGTTTGCTACTGGTGCCCTGGAGCACAGTGCCTCGGAGGTGCGTGAAACAGCAGCCAGGATAATCCAGATCCTCTACCGCCAGCATAAGAGCGCTGTTTTGGAATACCTCCCTCCTGACGACGCCAACACTCGCAAGAACATCCTCTACAAAAACATCTTCGAGGGGTTTGCCAAGATTGACGGCCGTCCcactgagacacagaccaaGACTTTGAAGAAGGCTGCCAAGCAGGAGgtggagaaagagaagaaagcgGAGATCCGTGCTCTCCAGAATCAACTGGCCGCCTTGAAGGAGATCTCCACCAGTGACAAGgGGAAGGAGAAGAGTAAGGCGAAGGAGAAGGAAACTCATAAAGCCATTAAAACAGGCATTACAGGTGTTAAGAAACCCCCCCCTGCCCAGTCCCCAGACACAGGGGATGATCAATCTTCAGTGGCAAATTACCTAGACAACCTATGCATATTTTGTGGTGAGAAGGATGACTCTTTCACAGAGGAAGGCCTGGATTTGCATTACTGGAAGCACTGTCCGATGCTGAGACGCTGTGATCACTGCAAGCAGGTAGTCGAGATAGCCAGCCTGATTGAGCACTTGTTGACTGAATGTGACAAAAAAAGCAGCTTTGCCCAGTGTCAGCGCTGCACCGAGGCCCTGCCCAAAGAGGAGCTGTCCGACCACATACGGAGCAAGACCTGCAATCcttCCAAGTCTGAAAAAAAGTCTAACCACTGTCCCTTGTGCCATGAAAATTTTGCACCTGGAGATGAGAATGACATGTCACATCTGATAATGTACTATATCCTGGAAATCTCACCTAATGAGAAAGGAGGGCTGCAAACAGAACGTGCGCAGGACGGCAGCTCTACAAAGGACCCAACAGATACAAGGGAAAATGGGTGGTCCCGCCATTACAAAGCAGCCCTCCACAGGGGCAAAAGGTCGATCCACAGCTATGACGAGCAAGATCCCAGCCCCCAGAGCAGGAGCCCACAAAACCAACAATCGCACACCAGCCAAGCAGTGAATCCGCACTGAACACCGTGGGACGTACCACACTTACTAACGGCTCTTACGACAACTGACACAACGCTGCTGCTGTTTCATTAGGGACACAATGGACTTTTGAGAATGGGTAAGAAGCTCATGCATCGCACCCGATCCATGGGTGGAGTAAACTGCAAACGCTCAAGTTACTACAGACTCAGACAGTTTgccagtttgtgttttgtgtgtgcattgtcACCTTGCTGAGTGCCACCCGTGCTTCtccagtgtctgtgtatttTCGTAGTTTAAGCAGATATtctatatttatacttttttaaatattaaatatgatctGTTACTGTTTGAGAGTGTTCTAATCACtggatatataaatatctaaCTACCATATAATTAACTCTTATCCCTTTTTGTAGCACTAGGTGTTTTGCACTACAGTAGCAATGGTGTTTGAATATGGAGACTTTTTGTGTGGATTGAAAAGTGTGAGGTTCAGTTATACCTTTTCACATGGCAAAATAAAGCTCAAAAGCCTAGTCAGAGGGTGAACTTTGAGCTGAAGTGCTGGGAAATTGTGTAATGGCCTAAGCAAATTGAATTTGTTGATAACAGAGTACTTAGCATTTTGccaaatataaatgtttgccTTTCATTGACTTCCCTTTGGTTTTTCTATATTTCCATTGACCAGTATGTGACACTGTGTGGGGTGGACATGGCATCTGGGCTCTCAGGTGGTGTGTTGAAAAAACAGAGGCACGGGTTATGGggaaataagtttttttttttaacacagtacACATGTGGTCAAACTAATCAGACATACAAAGACCAAAACAAACCTTAGTTCCTTGTTGAGTCTAAACTaaacttaaacacacacacaaataataatactgtaatttataatCCAAGTCAAATTCAAGTTTCAAGTTTGTTACCATGATTAGTTTCAAATGCTGTTCTCTCTCAATCACACTGGGAAGTGGATTCCTTCCCTATTTTATCGACGGGGGAGCAAGTCGCGGACGAACCAGCAGATCAGGTTTTTCCTCTGTACTTTTCCTCCCCTGGTGCAGGGCAGTTCGGGTCACTGTGCCAACCAGCACAGCATCAcagtatttatgtttgtgtgtgtgtatatatatatctaaagcTATCTAATTAAACTTGCATTCAAGTTAACATAAATGTACATAGAGTACACACATCTCCACAAACtgaaagtaaatgaataaaatcaattttgtGCAGTATTAGATGTTTACCAGAGGTTGTAGGAGTTTTTGGGTGTGTAAATGTGGGGTCACCCTTATATGCAGTTACAGAGCACGTTCTAACGGTTTCACtaaaaaacttgaaaatgaaTATGATTTCACTGACTATATGTACTTTTGAGCAATACCGAtaaagggattttattttaaaatagtcacCGACTGGCATAATTCTGTAATGATGGGCACAGCAAGCAGCAGATCTTTGGAAAGCCATTGGTCTCTTCATTCCAGATAGACCTTAACTGAGCTGTTCTGCACCGTCACTCAGACCCTGTGTTCATAAACAAAGTATGGATGGTGTCGTGAATATTTTACATCACAGCTGGCGACAGGGTGTTACTGTCTTCTCTACACACATCACCAGACCAAGGCCAACCAATATGTTTCTACATTTTGTACAAGAAAACACAGTCTCCTCTGACACCATCAGTTCTTGTGTTATGTACCTACATTTCAGCCTCAAACCAGTCtaggagagaaagacagagaagacCTCTGCAGAGGAAATGGCTGCAGGACGCAGGCTGTAGTGATGTACCCTATCAGTGTCCTAGGAGAGGTGATACCAGTGTGACTCACACTGATCATGGTGTTCACAAGAACCCAATAGTTACTTttgagagggagaaaggggggAGGTGTCATTGTTATTGATGGCTACCAGGAaccaggaagaaaataaataaataaataaatatatgtattcatattgatTAACATTAGCAGCCAAAGTTTTAGTACGTAATCAAGGGAGATTTTCCTTATGCAAAAACAAGAGACCTTCAAAGCTTTCCTCGCCCTACTCTGGCATTGTAATTCAAGTCATCAAGAGAACATAGCACTGAACTGCATCTCCAGCTAATTACTGTGTGGCTCTATGCAACAGTGTATCTTCTGCTGAAATAGCAGCATTTCGCCAGAGCAGAAagcattatttaaatctgtttgtCAAGAttgtaaaatagattttatatgtatggatttgatttttttacaGcagtgtatgtttgtttttatttcttacattgttttttatttgtttttcttttttctttatttatgggctcattgctttaatttccttaaaataacatttatttgtttgtttggcaaCAAGATAAGATGCAAAGGGAAGCAATGGGTTTCTAAACTGTAGTGAATACACacatagcacttatacaacacaTGCACTGAGATCAACTCTCAGGTAGAAGAATACTTCAGTTAGAAAATATTCTGTGAGAAGATTAGTAACTTTTTCCATAGTAGTGCACTGTGCTCTCCCtcttgaaatagaaaaataaacttatttCTCGAATTGTATATGGtaaaactttaattttcttcatcattatttttaactgttgaATCCATCCATGAGTTGATGCATACAAATTTTAGGAAATCTGTATATACTTAAAATAGATTGTCTGTCTGGTGGAGTaataattcagtattttttatatttattatacttgCTAAGAATATTGCTACCTTTCCATGAAAAATAATTCCATGAAAGACAGATGTTCTTATAAGATTGTCATTTTCATATCAGTTTGAAATTATTGCCAGAGTTAAGACCAGAAAcggaaaataaatatcaactAGAGtatatgaattaatttgaacaaatgCAACCCAGTGCACTTTTAAATGTGCTACACAATTAAGCTCATGGAAGCAGAAACCTCCCAGAAGAGCTTATGATTGttgtttgaaatgcattctgtattgtgtgtgattttgagtcattgaaaaaatacaaattgtcaaATTACCTCTCCAGCCCACTATTTTGTTGTaaacacagttttgttttattgatctaaaaactgaataaataaagtcttatttttt

Function

GO: NA

KEGG:

id description
K16458 CEP104; centrosomal protein CEP104

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152632 lncRNA upstream 26680 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 63061 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 146093 7829807 ~ 7834211 (+) True G121722
TU152524 lncRNA upstream 331988 7646718 ~ 7648316 (+) True G121688
TU152516 lncRNA upstream 417572 7561066 ~ 7562732 (+) True G121680
TU152757 lncRNA downstream 779761 8790301 ~ 8792478 (+) False AMCG00002245
TU152769 lncRNA downstream 805790 8816330 ~ 8816553 (+) True G121862
TU152927 lncRNA downstream 1237777 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 1532075 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 1614704 9625244 ~ 9626221 (+) True G122058
AMCG00002224 mRNA upstream 42371 7927590 ~ 7937933 (+) True AMCG00002224
AMCG00002217 mRNA upstream 316615 7658258 ~ 7663689 (+) True AMCG00002217
AMCG00002215 mRNA upstream 569074 7393816 ~ 7411230 (+) True AMCG00002215
AMCG00002216 mRNA upstream 589653 7382538 ~ 7390651 (+) True AMCG00002216
AMCG00002213 mRNA upstream 601864 7325990 ~ 7378440 (+) True AMCG00002213
AMCG00002231 mRNA downstream 6353 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002236 mRNA downstream 117657 8128197 ~ 8151854 (+) True AMCG00002236
AMCG00002235 mRNA downstream 150786 8161326 ~ 8178947 (+) True AMCG00002235
AMCG00002245 mRNA downstream 728231 8738771 ~ 8791343 (+) True AMCG00002245
AMCG00002241 mRNA downstream 795576 8806116 ~ 8809795 (+) True AMCG00002241
TU152502 other upstream 583743 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 1377696 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 1377696 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 2756806 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 4440750 3537619 ~ 3539554 (+) False AMCG00002098
TU152752 other downstream 743186 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 1833740 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 1833740 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 2557372 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 3366400 11376940 ~ 11377738 (+) False AMCG00002311

Expression Profile