RNA id: TU175869


Basic Information

Item Value
RNA id TU175869
length 1547
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G139838
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8003904 ~ 8005450 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCTTCAGTCCTGACCTTCACGATCACTTTTGATGATCTTTCCACTACATGTCTGCAAGTCAGCATTATCCTCGAATTCATAAGCACCCCAGAGCCCCAGAGCTGGCCACACTCAACAAGGACCACCACAGGATGATTTTGAAGAGCTCTGGCTTCGGGGCCACTTGACAAGACCTGTGTGAAAGTCACTGGTCTCTGACGAGACTTTTCTTTCAGCCATGGGGCACTTTTAGAGCCCAACATCCTAATATTCCTGAGAATATACTCTACAGAACACACCAAAGTCAGACCAATCCATTCGTTTGCCTTCCTGCATAATGAAGACACTATTAATCCCACGAGGTAGAAGTGGTCTCCTTTCTTTATGAAAAGCCCTCCTCCTTCAGTGCCAGGTAAGCAGCGAGCATCTGTCAGGATCACCGCATTTCCCTCCCCAGCCAGATTGCTCACGATGCCTTTGCTGAGGGTGTTCATGAATATATCGAGGCAGACCGAACCAAACGGAGAGCCACAAACAAAAGTCACATCTCCTTTTTGTAAATGAGAGCTGGACAGCCAAGGTGTGACCCGGTCGTCTTCCTCCAGCAAACCAGGAACCTTCAACAAAGCAAACCAACTTAAAAACCTGCTGTCCTTTTTCATCTCGTTCAGCTCAGCATCCTCTTCGTTACTGTTAAAACTCCACTTTTCTGACGTATTGAACACATTCTCGAAAGTCTCCTGAAATTCCTGACAGGACAGAAGCATGAGGAACTCTGCCTTTTGAGAGGACAGTCTGGGCTTGCTTTGAATGTCCATATTTGTTTGCCCATAGCATTGGTTCATTGCTTGACTTGGCATCCTCTGAGTATTGGCAATCTGGGTGTCTATTATATCATAATGCTGTATGTAAACCTGCAGTTTATTGCTGAAGCTCTCTGGAAACAAAACCTGGCAGTCAGAGAGGTTAATGTCTTTATTCATGAGAAATGAGGAGAACAAAAGACCATGGCAAACCACTATCCCAGACTGGGCATTCAGGAGAACCCCACTCCCGCTCAATGGCTCCTCTGCACAGCACCCTGATCCCAAATGTTGTGGGCAACCAAGTGTCTTCCCCCAGTTTGACTCCCCAGCTGCCTCAAAAACTGACACTACACAACACGTTTCTTCCATGGGTCCCATGCTGATTCAAAAAACGTTTGCAAGTATCTAAAGAGAAGCTCTTTTTCGTTAATGATCATTTAAAACGCCGTTCCAGAAAGTAATACATTGGGGTaagtttaaaacacacacaaacgtgGTGCAACAAGTACAAAATTCAAAACAGTATTCCTAcagaaatatgtaatgtttttatccaACACCTATAAACATTTGTTCCCAGTGTAAATGCTGTGAAACTGTTCtattatatgtatatgattCACACTATTTTAGAAATCCGCCTATATTTATGTCATTTACAACACAccgaaacaaatatatttaattgatattgtTAAATGATTACGTTACAGTGCCAAAGCAGGAATGTTTCTTCTACCGAGCTACCCGTGTCCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175868 lncRNA upstream 259 8003315 ~ 8003645 (+) True G139837
TU175867 lncRNA upstream 847 8002802 ~ 8003057 (+) True G139836
TU175863 lncRNA upstream 4645 7998213 ~ 7999259 (+) True G139832
TU175856 lncRNA upstream 50564 7953126 ~ 7953340 (+) True G139827
TU175809 lncRNA upstream 92905 7909349 ~ 7910999 (+) False AMCG00002960
TU175883 lncRNA downstream 14570 8020020 ~ 8021401 (+) True G139850
TU175921 lncRNA downstream 175855 8181305 ~ 8181534 (+) True G139880
TU175954 lncRNA downstream 274206 8279656 ~ 8280129 (+) True G139906
TU175976 lncRNA downstream 490702 8496152 ~ 8496965 (+) False AMCG00002982
TU175977 lncRNA downstream 492564 8498014 ~ 8499226 (+) True G139915
AMCG00002966 mRNA upstream 5879 7955216 ~ 7998025 (+) True AMCG00002966
AMCG00002961 mRNA upstream 57380 7938432 ~ 7946524 (+) True AMCG00002961
AMCG00002960 mRNA upstream 82996 7909252 ~ 7920908 (+) True AMCG00002960
AMCG00002954 mRNA upstream 140483 7847978 ~ 7863421 (+) True AMCG00002954
AMCG00002953 mRNA upstream 158034 7843544 ~ 7845870 (+) True AMCG00002953
AMCG00002965 mRNA downstream 33225 8038675 ~ 8044413 (+) False AMCG00002965
AMCG00002974 mRNA downstream 65534 8070984 ~ 8081794 (+) True AMCG00002974
AMCG00002973 mRNA downstream 131290 8136740 ~ 8172504 (+) True AMCG00002973
AMCG00002976 mRNA downstream 200941 8206391 ~ 8213095 (+) True AMCG00002976
AMCG00002977 mRNA downstream 224197 8229647 ~ 8234400 (+) True AMCG00002977
TU175799 other upstream 77072 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 624417 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 930368 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 1850784 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 2905160 5096731 ~ 5098744 (+) True G139176
TU175890 other downstream 32127 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 1296162 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 1320038 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 1772800 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 2749451 10754901 ~ 10756840 (+) True G140478

Expression Profile