RNA id: AMCG00003547


Basic Information

Item Value
RNA id AMCG00003547
length 2386
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00003547
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9172738 ~ 9179761 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACACCTGTTTAAGATGTCTTCTGAGACTGGCATTTACTAACTGGTGATTTCAGTTGGGGCACCACTGCTAGTTTCACTGGAGAGTTGGTTTGGGAGGAGAAAGACGGAGAGACCTCCTTGTTTGTCTGGGTcattggttttcatttaatagAAATGTCTGCAGCcgtatttatacatgtatacaaaacATGGTGCCCTATACACTCGGAGGACGTGGatttgctgtgtgtgtaaatggTCATGTTGAAGCGGTATTGGGATTGACAATGCTGTCACTGGTTGTGAAGGTGATTCCCTACACTGGGACGATCCTGGGCGGCCTGGAGCCTGGGGAGATGGTGCTGATCCAGGGAACTGTCCTCAGTGATGCCGACAGGTTCCAAGTGGATTTCATGTGCGGGAGCAGCACCAAGCCCAGGGCGGATATAGCTTTCCATTTCAACCCCCGGTTTAAGCGGTCGCCCTGCATAGTGTGCAACTCGCTGCAGGGGGACCGGTGGGGTAGAGAGGAGATCCTCTACGAGATGCCTTTCAAACAAGGCGCGCCTTTTGAAGCCATCATTCTGATCCAGGAAAAAGAGTTCAAGGTGGCGGTGAATGGGATGCATACCGTGGAGTTCAGACACAGAGTGGACCTCGCGAGGGTCAACACGCTGGGGATGTATGGCAAAGTAAAAGTGGACGTCGTCGCTTTCTTTTTAAGCTCTgaacTGTTTTCTGAATCGTTCGACTTTACCCTTCCTTACAAAGGAAGTCTATTTAACGGAATGAGGCCGGGACAAACCATTATGATTAAAGGACAGATCAATGCGTATCCGCACAGCTTCACCGTGAACCTGGGCTCCAGTACGTCGAGTGACATCGCTCTGCACCTCAATCCCCGCATCAAAGCCGGTGTGTTCATCAGAAACTCCTTCCTGCACGAGTGCTGGGGCCCCGAGGAGAACACCTTGCCCAAATTCCCCTCGAACACCTTGCCCAAATTCCCCTTCACTCCGGGGGAGTATTTTGAGATGATCATCTTGTGTGAAGCGCATCAGTTCAAGGTGGCTGTGAACGGGATTCACCTGCTGGACTTCAGACACAGAGTGCAGGATCTGAGCCGCATCCAACAGGTGGAGATCCTGGGCGACCTGCAGCTGCTGGACATGAAAGTGTGGTGACCAGAGTGCACAGAGCGCAGCCCCCCCACATGCACATGACACCCCAGACACTCCTGTCACTCACTGCATGGATAGTTCGATTTGtcatctttttaattattttccttttaaactgtataaaacaaaaattaataatctataaaacatttttctattaaataagtgacttgagaaatgttttgaatgtaaaAGTGCTGCCCTCgaagaaatgtatttctcaaagttaggcttcaaaaacaaatctgttctcAATTTGGGGATGAAAAGACAACTTTTAAGTAGACAAAAACTGACAACACAAGACCAGCTCCTTCAATGATCTTCTTTGACACGAACAATTGTCAGAACTCGTTTTCCCAACAGTCGATTTGCCatttggtgtgtgtatatgtatatatatttatatacacaaactATTTTATCTCTGTCTTAAATATCACATCCTCTCAGCCTGAAACACTAGCTTCACAGAAAAGGACTTGGCACCGTTTTAGAAATCAGTACTGTGCTTTCtaccagaaaacaaacaaacacagctccTTCTGAACACATCTACCATAAGACACTGCAGAGAACAGCTCTGGCAAATTCCAGCTTCAAATCTTAGAAGGGAAAGAGTCACTGGACATTAGTCAGGAaggatgaagaaaaataactactgcCATTTTTGTAATGCGCTTCTGCCCATATTGTCTTCAGTCTTGCTCGTGCTTTAGGTCTGGACTTGAAGATCAGAGCTTTTAAATAAGATGCATGTCCAcagaaaagaggagagaaaTGATCGGGCCATTCGAAATACAGGTTAAAGCACTAGAGCAGATGCTCCAAACAGGAAATATTGTGCATTTCTTTGCAATGTGTGTTCCTCGGAAAGCCTGGCATATTGCGAAGTTATGGAAAAATGGTTGAATctgaagcttttattttttttaatctgctttctgattttgtattctttaGCCTGTATGACTTCCATAAAGTGTAACTGAAGCATTAagacttttcttttcctcctgtACTCTGTAACATACATGATTAACTCCTGACCTCTCATCATTACTCATCAgattcaaaacaataaatacatcaatctcagatcttgctgttttttctcccccacccctttatttttatggatttatttttgtcatctGCTCTGGCACCTGTAGTCTTGATTTGCTTGGGTTAGAATCCagtcatatatatgtatgacaAGATGTG

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K06832 LGALS8; galectin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701 lncRNA upstream 65974 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 145106 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 150165 9009297 ~ 9022573 (+) True G1430
TU1677 lncRNA upstream 152520 9009297 ~ 9020218 (+) False G1430
TU1625 lncRNA upstream 230987 8940151 ~ 8941751 (+) False AMCG00003541
TU1863 lncRNA downstream 520796 9700557 ~ 9703478 (+) True G1574
TU2011 lncRNA downstream 1057095 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 1251903 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 1870390 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 2048198 11227959 ~ 11228275 (+) True G1891
AMCG00003546 mRNA upstream 3797 9165686 ~ 9168941 (+) True AMCG00003546
AMCG00003543 mRNA upstream 27780 9140544 ~ 9144958 (+) True AMCG00003543
AMCG00003545 mRNA upstream 41578 9109841 ~ 9131160 (+) True AMCG00003545
AMCG00003544 mRNA upstream 65973 9075890 ~ 9106765 (+) True AMCG00003544
AMCG00003540 mRNA upstream 190717 8979600 ~ 8982021 (+) True AMCG00003540
AMCG00003551 mRNA downstream 76111 9255872 ~ 9263310 (+) False AMCG00003551
AMCG00003557 mRNA downstream 331803 9511564 ~ 9519396 (+) True AMCG00003557
AMCG00003556 mRNA downstream 341634 9521395 ~ 9524445 (+) True AMCG00003556
AMCG00003558 mRNA downstream 358554 9538315 ~ 9540081 (+) True AMCG00003558
AMCG00003562 mRNA downstream 581099 9760860 ~ 9774097 (+) True AMCG00003562
TU1569 other upstream 520334 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2677833 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 76067 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 597747 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2310424 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2393970 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 3857676 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile