RNA id: TU1763


Basic Information

Item Value
RNA id TU1763
length 2309
RNA type TUCP
GC content 0.40
exon number 4
gene id AMCG00003551
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9255828 ~ 9263468 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGACAGCTGTGCGTGTGACACTCGAGCGGCACGGCGGCGCAATGTTGGACGCGGTGGAGCCCGAATCCGCTGCAGCCCCGGGTGAAAACGGAGATAAACTGTCCACGGTCAAAGGCTGCCTCTTCCTTGGCACCGTGGCCACGGCGGGGATGGTGGCCGGGTTTGGTACGACGCTGGCAGTGGCCAAGAAGAGAAGTCCTAACTGGTTCAGCAAGGGAGTGATGGCCACTGCGGCCGTGCCGGAGAGTGGGTCGTCTCTGGCTTTGAGGGCGCTGGGCTGGGGATCTCTGTATGCCTGGTGTGGGGTTGGCCTCCTCAGTTTCGCCATTTGGAAGGCTATGGGAGTTCACAGTTTAAGAGAGTTTCGGGAAAAGATGCAGTCGATCATCCCAGCTGTCCCGAGGAACGAGGAAACCCAAGCAAAAGCTGAACCGTTCGACTGGGAGAGTCTCTTCAAGTCGAAGTAACAGCTTGTGACATTCCTCTGATGCTGACCTTCAGCCCGggtttttttaaaattttattttaggaCATCATGAACAACTATAAATGCCTTCAAATGTCTGGAGCTCAATTTCCACATTGCTGGCTGGTTGAGACTTGACAGGCCTCTTTAACCTGTCAGCAATGTCACTGTTCGGCCAACGATTTAAGTGGTTATTTTTTCGGGAGGCGGGCCCACTCGAGTCACGGAATTGAATCTGTCAAGGGAATAGCGTGGacttttaaaatgctgtctGCTGAAGAGAAGTCTGTATTTGACTATTTCAGATGTCAGGTAAGCCATCAAACCACAAGCTGTAGTTCCCACTGACCACACACTAACGGACATAATTTCAACATGATGTTTACTCTGGGGGGAAAAACGCTgggtttaacatttaaattactctTACGGCCAGAGATGCACagatttaaaaagtcaattcTAACTTGCACAATTGACTGGCTTGCTGTTGCTGAATGTACTACACTCGCATGGCAAAATGGACGGTTATTTTAGGCAACTGGTCAATATGTAAGACTTCCTATATTCCTATTCAAcacaaatgcagtttaattgGCTGAAAGCACGCTGGCATGTGGAACATTGGCAGCTGAAATGCTGAAAATGAGCAATAGTCTATTCTGGAAACTCAGCTGTCAACTGAAAATATGTTGACAAGTCAAGTTGTCAGTCAGTGAGACGTGGTCAGTTTTTAGAGCTGATAAgaattgcttaaaaatatacttgtgtATCCGTTGAGACTTGTGTTGAAGACAGGTGCGTCCGTGAGTATGCAAAGATAATCTGATTTGAAGGATTCGATCTTTTACTTTTCATGTTCGACTGCAGACTGTCCTTATGTCCTTATGTGTGTGAGGGTTTGGGGTGACCATTTTAGAATACGTTTGTAAATAACacttgattgtatttattgattaccatgttcaaatataattttatctgTGATGTTCATAGACATCTGAATTAGTTTGCATTGAAGAGCCGTTTGTGTGGTATGGGGGAGATTTTGTGCTCTCTTGAATATGACTGTTCATGCTACCTACGAATAGtgagtgaaaataaacatgcattcatTTGTTGAAGAAATCAGCAGCTTTTGCAAACTCACTGTAGATGATGCTCAATAGCAGgtaaatacagacaaaacaacaaTGGTTCATCACTTCTTGGAACTATGTTGGGGGTCTTTGTTGTCGTGGAGAATTCAATGCTTCCGTTTCCCAGTGGAATACAAAGCTGGATTAAACAATGTCGTATTTTTGCTGACCTGTTTTCTGAAGGCAAACACTAATCTGCTAAACAGCACCATGCATTTGATCAGTGCTGTGTGCCTTTTCTCTTACTACTATAAACCAACTGCACGTCTGGAATGTCAAAGTCAGTTCAGTTCAATTTCACAGAGTCCAATTTTCCAATAACCAGCCCACAACGGCAAAAGCAGAGAAGTTGGAACCTTCCTGTGTCTGTCAGTGCTACTCCGTTCAGCTTCTCAAAAGAAGGCGAGATGTCACTGAGTGCTGCTCTTCCTCACTGGCAGGCCTGCATGCTGGCACAGCTTTCTCCGCCTCATCCAACAACCATTCAGACAAACCATCAGAGAGCAGGATGTGCAGAGACCCAGGACGAAAACCCAGGGCTGAAGTGTGGTGGTATTTGCTGCGAAGCACCATTGGTTCCGCTATGTTTACTGCcgttctgtctgtgtttgtgtttatgtaaatcTAGTGGAAACTGGGGatttgctgcatttgttttggaaaataaaagaaaaaaatcaagacCAATGATGCTTGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701 lncRNA upstream 149064 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 228196 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 233255 9009297 ~ 9022573 (+) True G1430
TU1677 lncRNA upstream 235610 9009297 ~ 9020218 (+) False G1430
TU1625 lncRNA upstream 314077 8940151 ~ 8941751 (+) False AMCG00003541
TU1863 lncRNA downstream 437089 9700557 ~ 9703478 (+) True G1574
TU2011 lncRNA downstream 973388 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 1168196 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 1786683 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 1964491 11227959 ~ 11228275 (+) True G1891
AMCG00003547 mRNA upstream 76067 9172738 ~ 9179761 (+) True AMCG00003547
AMCG00003546 mRNA upstream 86887 9165686 ~ 9168941 (+) True AMCG00003546
AMCG00003543 mRNA upstream 110870 9140544 ~ 9144958 (+) True AMCG00003543
AMCG00003545 mRNA upstream 124668 9109841 ~ 9131160 (+) True AMCG00003545
AMCG00003544 mRNA upstream 149063 9075890 ~ 9106765 (+) True AMCG00003544
AMCG00003557 mRNA downstream 248096 9511564 ~ 9519396 (+) True AMCG00003557
AMCG00003556 mRNA downstream 257927 9521395 ~ 9524445 (+) True AMCG00003556
AMCG00003558 mRNA downstream 274847 9538315 ~ 9540081 (+) True AMCG00003558
AMCG00003562 mRNA downstream 497392 9760860 ~ 9774097 (+) True AMCG00003562
AMCG00003570 mRNA downstream 514216 9777684 ~ 9781756 (+) False AMCG00003570
TU1569 other upstream 603424 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2760923 6487692 ~ 6494905 (+) True G1012
TU1883 other downstream 514040 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2226717 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2310263 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 3773969 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 3891592 13155060 ~ 13156627 (+) False AMCG00003655

Expression Profile