RNA id: AMCG00003557


Basic Information

Item Value
RNA id AMCG00003557
length 1623
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00003557
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9511564 ~ 9519396 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTTGGAAGGAGCTACTCGTCCCAGTGCGGACAACTCTGCGCACATTAAGACACCTGTATGGCAAGATAAGAAGGGGATATTGTACGAGGCAACACTCTTGTGGCTGGGATTGAACGtgcttctgtttgtgttggCTTTCCTCTCCTACACCAGAGACGAGGCCTACACTTACACCCGTGCCATGCTGGGATCTGGCTTGTCGTGGGCTCGAGCTTCTGCAGCCGGTGCCAATTTGAACTGCATGGCGGTTCTGCTACCCGTCAGTCGCAACCTTATCTCCTTCCTGCGAGGCTCCTGCGCTTGCCAGAAGAGAGCCCTCAGAAAGCAGCTGGACAAGAACATTACCTTCCACCGTATAGTTGCCTACCTGATAGTGGTGCATTCAATCATCCACATTGTAGCACATCTATCGAACATTGAGAGGTATCATGAAAGTCAGTCACTGGAAGCCGGAGATCTGCTGCTGAAACTCTCTAGTCTTGGGGAGAAGTGCAACGAGACGTACCTGAACCCAGTACGGACTTACAATACGACTCCTATGAAAGAAGTCTTGATTAATATATCCGGAATTTCTGGATTGGTGATTGCGGTTGTTCTAGTCCTGATGGTGACCTCATCAACGGAGTCTGTTCGACGATCATCTTACGAGGTTTTCTGGCTAACCCACcacttttttgttgtgttttttattggacTAATCATCCATGGCACTGGGAGGATTGTCCGAGGGCAGACCCCACAGAGCCTATCAGACCACAACGTGTCTTACTGCAAGCATCACGTGGATGAATGGGGAAATTCATGGAAGTGGGTTGTCGGTCCCTTGTTCATCTTCGTCTGTGAAAGAATTGTGCGTTACTATCGATCCTTGCAGCCCGTGGTTCTAACTAAAGTGGTAACCCATCCTTCAAACGTCCTCGAACTGCAGATGAAAAAGAAGAGTTTTAAGATGCAATCGGGACAGTACATCTTTCTTCAGTGTCCCATGATATCACCTCTAGAATGGCACCCCTTCACCCTGACGTCAGCGCCGGAGGAGGACTATTTGAGTGTCCACGTACGCATAGTGGGAGACTGGACCGCCGCCCTGCATGCCGCCTTTGTGGATCCGAGAAGAGATCCTGGGGTATCTGCCTACTTGACTCAACTGGCAGTGGATGGTCCATTTGGCTCTGCCAGTAGTGATGTGTTCCAGTATCGCATCAGCGTGTGCATTGGCACTGGGATAGGAGTGACTCCTTTTGTCTCGGTTTTGAAATCACTGTGGCACAAATCCTACCTGCTGTTCTCCCTGGAGACCCAGATGACAGGGAAAGACGATCTCCTGAGCTTTCACATCTTCCTCACGGGATGGGATGAGGTTCAGGCTCGGCACATATCGCTGCACTGCGGAGAACAGAGAGATGTCATCACAGGCTGCAGGGAGAAGACCTTCTATGGCCGGCCAAACTGGGACCAGGAGTTCAGCAATATTGCGGCTGCCCATCCCTGTGGAAATATCGGAGTGTTCTTCTGTGGCCCCAAGCCCCTCTCCAAGGTCCTTCACAGGATGTGCAACCTCCACTCTTCCCCTGACCCCCGGGGGGTACACTTCTACTTCAACAAGGAGAGCTACTAA

Function

GO: NA

KEGG:

id description
K21422 NOX3, MOX2; NADPH oxidase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701 lncRNA upstream 404800 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 483932 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 488991 9009297 ~ 9022573 (+) True G1430
TU1677 lncRNA upstream 491346 9009297 ~ 9020218 (+) False G1430
TU1625 lncRNA upstream 569813 8940151 ~ 8941751 (+) False AMCG00003541
TU1863 lncRNA downstream 181161 9700557 ~ 9703478 (+) True G1574
TU2011 lncRNA downstream 717460 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 912268 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 1530755 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 1708563 11227959 ~ 11228275 (+) True G1891
AMCG00003551 mRNA upstream 248254 9255872 ~ 9263310 (+) False AMCG00003551
AMCG00003547 mRNA upstream 331803 9172738 ~ 9179761 (+) True AMCG00003547
AMCG00003546 mRNA upstream 342623 9165686 ~ 9168941 (+) True AMCG00003546
AMCG00003543 mRNA upstream 366606 9140544 ~ 9144958 (+) True AMCG00003543
AMCG00003545 mRNA upstream 380404 9109841 ~ 9131160 (+) True AMCG00003545
AMCG00003556 mRNA downstream 1999 9521395 ~ 9524445 (+) True AMCG00003556
AMCG00003558 mRNA downstream 18919 9538315 ~ 9540081 (+) True AMCG00003558
AMCG00003562 mRNA downstream 241464 9760860 ~ 9774097 (+) True AMCG00003562
AMCG00003570 mRNA downstream 258288 9777684 ~ 9781756 (+) False AMCG00003570
AMCG00003569 mRNA downstream 301531 9820927 ~ 9853672 (+) True AMCG00003569
TU1763 other upstream 248096 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 859160 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3016659 6487692 ~ 6494905 (+) True G1012
TU1883 other downstream 258112 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 1970789 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2054335 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 3518041 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 3635664 13155060 ~ 13156627 (+) False AMCG00003655

Expression Profile