RNA id: TU12267



Basic Information


Item Value
RNA id TU12267
length 693
RNA type TUCP
GC content 0.51
exon number 4
gene id G9889
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56538254 ~ 56542063 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cctccctctctctctctctctctctctctctgcttctgtcTGAGGGAGTCTCGACTGactacaacaacacacacacacacacacacacacacacagagggagagagaaaatctgTAGAGACACACAGTCGTATCAGTCAATCTGTGCTATCGTTATATACAGCtgtacaaagacacacacatagagaaaTACACCATTATTTTCACGGCGTCTGCAATGTGACTCTACGTTATCTTCAATGGTCGTTTTTTCTACACAGCGCGGAGAGaaagaggAGAGCACATGTGAATGATCCACAAAGGAACAGACAGCCAAGGTGCCCACTGCACTATTCCCAGGACATGAAAATTGTGCGATCAGCGATGGGACCTGTACCCAACAGATCATGAAAACGCGGAATAACAAGGATTCGATGTCAGTGCGCAGTGGTAGGCGGAGACTGCAGTGTCAGGGGGTTGGTGTGGCCACGGGGGAAGGGCGGGGGCGCACTCTGCCCAGCCCATGTCGCTCTGACAACCGAACTGAGAGAACACCCTCTAGAGACACTGTAGAGGGATTAGACAGCAGGCGCGTCAATCGGCGATCCAGAGGCCATGAATCGTCGGAAAGTGAGGGGGAGGGACTTCCCCCACCACCCAAGAGACAGAAAGTGCAGGTTAGAACCCGTTAACCAATCAGAGCACTGTTCTGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU12262 lncRNA upstream 38670 56497330 ~ 56499584 (+) True AMCG00004681
TU12239 lncRNA upstream 83972 56453374 ~ 56454282 (+) True G9863
TU12214 lncRNA upstream 87322 56436762 ~ 56450932 (+) True G9842
TU12225 lncRNA upstream 110173 56424270 ~ 56428081 (+) True G9852
TU12212 lncRNA upstream 114897 56369030 ~ 56423357 (+) True G9841
TU12286 lncRNA downstream 71969 56614032 ~ 56614458 (+) True G9903
TU12287 lncRNA downstream 73422 56615485 ~ 56694723 (+) False G9904
TU12288 lncRNA downstream 73422 56615485 ~ 56694723 (+) False G9904
TU12289 lncRNA downstream 73422 56615485 ~ 56694723 (+) True G9904
TU12299 lncRNA downstream 115797 56657860 ~ 56658272 (+) True G9908
AMCG00004680 mRNA upstream 2991 56528156 ~ 56535263 (+) True AMCG00004680
AMCG00004679 mRNA upstream 14617 56512067 ~ 56523637 (+) True AMCG00004679
AMCG00004681 mRNA upstream 40672 56490093 ~ 56497582 (+) False AMCG00004681
AMCG00004673 mRNA upstream 178457 56315612 ~ 56359797 (+) True AMCG00004673
AMCG00004668 mRNA upstream 308540 56227798 ~ 56229714 (+) True AMCG00004668
AMCG00004683 mRNA downstream 92783 56634846 ~ 56643282 (+) True AMCG00004683
AMCG00004686 mRNA downstream 170290 56712353 ~ 56720075 (+) True AMCG00004686
AMCG00004688 mRNA downstream 182790 56724853 ~ 56729833 (+) True AMCG00004688
AMCG00004687 mRNA downstream 233142 56775205 ~ 56778426 (+) True AMCG00004687
AMCG00004695 mRNA downstream 247560 56789623 ~ 56801892 (+) False AMCG00004695
TU12050 other upstream 738323 55798889 ~ 55799931 (+) False AMCG00004650
TU11961 other upstream 945534 55591366 ~ 55592720 (+) False AMCG00004644
TU11820 other upstream 1410202 55127678 ~ 55128052 (+) True G9532
TU11809 other upstream 1463795 55074046 ~ 55074459 (+) True G9522
TU11699 other upstream 1772425 54747049 ~ 54765829 (+) True AMCG00004608
TU12349 other downstream 243789 56785852 ~ 56800654 (+) False AMCG00004695
TU12347 other downstream 246571 56788634 ~ 56793965 (+) True AMCG00004695
TU12410 other downstream 444843 56986906 ~ 56987644 (+) True G9982

Expression Profile