RNA id: TU11809



Basic Information


Item Value
RNA id TU11809
length 414
RNA type TUCP
GC content 0.45
exon number 1
gene id G9522
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55074046 ~ 55074459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GACCTAGCTGAGGAGGTGGCCCGGGTCAAACTGAGTCTCTCCGCCCTCTATCGGGAGGAGCAAgaaaagatcaaggtcctttccagggtccgcATCATGGAGGACGATGAGAAATGCAGCCGCTttttcttcaagaaaacgaaggagaggcagcctgcaatgtcctccatgatcgactcctcggggcaggaggtggagggcagagaggctgttgagacagtggtgcgggacttctacagggagttgtacgatcagaaggtggtggatcaaaatctgatccatcactttctgtccctgttggagtcccgcaacgagggggacgaggaggcgtaggaggatccagagatcaccaccactgaactctcccaggtgataaagagtcttaactctggaaggacaccgggtcccgatggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU11808 lncRNA upstream 13742 55060090 ~ 55060304 (+) True G9521
TU11726 lncRNA upstream 271611 54801977 ~ 54802435 (+) True G9464
TU11704 lncRNA upstream 284855 54783746 ~ 54789191 (+) False AMCG00004610
TU11703 lncRNA upstream 295145 54768610 ~ 54778901 (+) False AMCG00004609
TU11694 lncRNA upstream 369820 54699816 ~ 54704226 (+) True G9435
TU11811 lncRNA downstream 15922 55090381 ~ 55090641 (+) True G9524
TU11812 lncRNA downstream 39892 55114351 ~ 55114914 (+) True G9525
TU11813 lncRNA downstream 40545 55115004 ~ 55116494 (+) True G9526
TU11814 lncRNA downstream 44534 55118993 ~ 55123517 (+) True G9527
TU11819 lncRNA downstream 52569 55127028 ~ 55127303 (+) True G9531
AMCG00004623 mRNA upstream 965 55072497 ~ 55073081 (+) True AMCG00004623
AMCG00004619 mRNA upstream 64726 55002426 ~ 55009320 (+) True AMCG00004619
AMCG00004614 mRNA upstream 100204 54964810 ~ 54973842 (+) True AMCG00004614
AMCG00004616 mRNA upstream 115088 54958320 ~ 54958958 (+) True AMCG00004616
AMCG00004612 mRNA upstream 120925 54951667 ~ 54953121 (+) True AMCG00004612
AMCG00004626 mRNA downstream 76280 55150739 ~ 55154214 (+) True AMCG00004626
AMCG00004624 mRNA downstream 82607 55157066 ~ 55171212 (+) True AMCG00004624
AMCG00004632 mRNA downstream 220716 55295175 ~ 55361709 (+) True AMCG00004632
AMCG00004635 mRNA downstream 349976 55424435 ~ 55431470 (+) True AMCG00004635
AMCG00004634 mRNA downstream 365100 55439559 ~ 55455137 (+) True AMCG00004634
TU11699 other upstream 308217 54747049 ~ 54765829 (+) True AMCG00004608
TU11698 other upstream 339364 54727808 ~ 54734682 (+) False AMCG00004606
TU11647 other upstream 444839 54600618 ~ 54629207 (+) False AMCG00004604
TU11514 other upstream 678746 54394791 ~ 54395300 (+) True G9300
TU11498 other upstream 720101 54353182 ~ 54353945 (+) False AMCG00004588
TU11820 other downstream 53219 55127678 ~ 55128052 (+) True G9532
TU11961 other downstream 516907 55591366 ~ 55592720 (+) False AMCG00004644
TU12050 other downstream 724430 55798889 ~ 55799931 (+) False AMCG00004650
TU12267 other downstream 1463795 56538254 ~ 56542063 (+) True G9889
TU12349 other downstream 1711393 56785852 ~ 56800654 (+) False AMCG00004695

Expression Profile