RNA id: TU1677


Basic Information

Item Value
RNA id TU1677
length 2743
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G1430
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9009297 ~ 9027632 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggtttataaaatgtcatttttattcatgttaCATAGCTGTTACATAGggcattaaacattttcacaagGCTTTTGGGGACTACAATCAATGATTCGCAAAACACAATAGTGGTCCAAATCTCTAATGACAATCACTGGACAAACCAAACACCCTCTTACATGTGCACTAACCTGCATTGAAAAGTACTAAACTGAATACTTGGACTTGGTGTATATAGTATTGGTTCCCATTCCAGTGTATTTAAAAAGGACATGCatgtaggattttttttatttatttattttaattttttttaaattaaaaaaaatatttttggtcTTCAGAAAGCGCCACCTTTTACTCAGACATGCTACAAAGTAACACATTGAAGTGAATATCATAACTAGGAAGGAGTGTTTGTGACCTTAAGAAAGAAAAGACctaaaaaaatcaatgaaagCTCTTGGCTGTGAAATGCTTGTTGCCTCGCCAGCTTCAACAGACTATGGCCCCTACAGCAGTACAGAACGTTGCCTTTGCAAATTAGCTAGCATATGCAGGGTCAGTTGGtctaatttttatttgtaaagatCTCAGGACGTACATGTGCTGTACACATACATGACAACCTTaggttaagaaaacaaatactgggGGTGTGAAAGGATAGCCACTCCATTTAACAGTCAGCTGAAATCCCACCCTTCACAATCGTCTATTCAAGTTCATTCTCTTACTTTGTGCATTCATCAAGATCTCATTCACTTGACAGATTCTCTGAAGATACACAAgtcctgtattttgtttatttttaaattggaagTTAACGTTTATATAAAGTGAAGCTATTAATACTTTTCTACAGCAGTAACCGTACACCAGGAAGGCCaggacaaacacaaaccaaggAATGGAGTcattttttcatacatttttttttttttttttttttccaaaagctGCAGTGAGAAAAGACTAAATTGTTGAATTTCCATATACAGCTATTCAGTAATGACGGGGTTTCATTGCTATAAGAATTCTGAGTGGAGCAATAAGGAATGGAGACGTgtaaaaaggttttttttttgtatttgtttttttgtggttttaggAGATATCCCCATGTGTATTTTAGTTGTCCGTACCATCTCCAGGTTCGCCATCCTCTGTTGCATTGTCTGATGTCCATaactagaaagaaaaaaTGTTAGGTTGTCTCTAAGCAACTGCATGATGAGGGTGCTGTCTTTGTATGAATCTTCATTCAGCGTATCAAGCTCAGCAATGGCATCATCAAAAGCCTTAAAACAGAAGTAAAGTTACATGTACAGGGAAACTACAATATTTCTGAACCTTTTTGAAAATACTACACTAGAAATGCTGATTTTGCCCCTCGTGTGAAATCCTGTCCAACTTATGACCTACATTGGAGTCTCCACCGCCCACCCCCTCTTCTCAGCAGTAGACCAAAAATGGAGCAATTTACTGTTGCTTAATTAACCCAGCTAATTTAGAACACATTCAAAGCTCCTTGCTCTAATcacttgttttatatataaccattaaaagttattttcagCCAGTGTAACCTGAATTGAAAATAAACCTTgtgtaaatgtacattaaaatgtacCCCACATTACACCTCATAGCATTTAGTGattgtaatttcacaaacatACACTATTGTTTTTACAGCTGAGAGCATGAATTTACTTAAATTGCGTTTTTTCATATTGCAAAATGAATACTGAACACTGTACACCCGCTTGTGTTGCTACATGTCTCAAagctataaatacattaagtaGTTGtgcatatacaaacatacattcataaaaaccttgcaggcatgacatgggaaagggaagctatagatcgaagcaagtggaaaccccgagaaggccttcatccagcagacGATCGATATAGGCTAATGATGTATACACATACACGCACTAGTACAAGACTTACTTGTTTTGCCAATTGGCAGGCCTTATCTGGGGAATTGAGGATCTCATagtaaaatacagagaagttgAGGGCAAGACCCAAACGGATTGGATGTGTCGGCTGCATGTCTTTCTTGCTGATTTCAAATGCTTCAGAATAAGCAGTCTGAGAGTTTTCTATCGTTgCTTTTTTGTCTTCTTCAGAGGCAACTTCAGCAAGATATCTGTAATAATCTCCTTTCATCTTTAGATAGAAGACACTGCTTTCTGGCTGCGTCGAGTTGGCGATTAAATATTTGTCCAGCAATTTCAGCACATCGTCGCAGATGCTCTTCAGCTCGGACTCCACCTTTCTCCGGTACTCCTTCACCATCTCGATCTTCTTGTCCTGCTCCTCGGTCTTCTGCTCGATGCTGGAGATGACCCTCCAGGCGGACCTCCGGGCGCCCACCACGTTCTTGTAGGCGACGGACAGCAGGTTCCTCTCCTCGTTGGACAGCTCGGCCCCCTGCTCGGTCACCTCCTTCATCGCCGAGGCCATGTCGTCGTAGCGCTCGGCCTGCTCCGCCAGCTTGGCCTTCTGGATCAGCTCCGTTTTATCCATCGTTTCGAGGGGACTGTGTCCTGCAGTTCTTCCCTAAAGCACAGCGCTCAGGCGAGTCGAGGGGCGAGGATACACGCAGCTGCAGCGACCTAGCGATCTGCACACATATGACTGCACAGGCAGACGGGGGAAGCAGGGCGTGAAGGCAATGTCCAATTCCTGCGGGGGGAAAGAAACTCACTCTTAGTACGCACACATCATCAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1625 lncRNA upstream 67546 8940151 ~ 8941751 (+) False AMCG00003541
TU1613 lncRNA upstream 165215 8843827 ~ 8844082 (+) True G1375
TU1577 lncRNA upstream 308743 8699466 ~ 8700554 (+) True G1347
TU1573 lncRNA upstream 342370 8661032 ~ 8666927 (+) True G1343
TU1531 lncRNA upstream 565273 8443740 ~ 8444024 (+) True G1303
TU1701 lncRNA downstream 80400 9100618 ~ 9106764 (+) False AMCG00003544
TU1863 lncRNA downstream 680339 9700557 ~ 9703478 (+) True G1574
TU2011 lncRNA downstream 1216638 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 1411446 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 2029933 11050151 ~ 11050644 (+) True G1855
AMCG00003540 mRNA upstream 27276 8979600 ~ 8982021 (+) True AMCG00003540
AMCG00003539 mRNA upstream 31454 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003542 mRNA upstream 49763 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003541 mRNA upstream 67619 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003535 mRNA upstream 166878 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003544 mRNA downstream 55672 9075890 ~ 9106765 (+) True AMCG00003544
AMCG00003545 mRNA downstream 89623 9109841 ~ 9131160 (+) True AMCG00003545
AMCG00003543 mRNA downstream 120326 9140544 ~ 9144958 (+) True AMCG00003543
AMCG00003546 mRNA downstream 145468 9165686 ~ 9168941 (+) True AMCG00003546
AMCG00003547 mRNA downstream 152520 9172738 ~ 9179761 (+) True AMCG00003547
TU1569 other upstream 356893 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2514392 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 235610 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 757290 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2469967 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2553513 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4017219 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063163 True 855 mRNA 0.53 5 NC_007117.7 52212927 ~ 52220692 (+)
rainbow trout (Oncorhynchus mykiss) TU104309 True 1495 TUCP 0.48 3 NC_048565.1 84158823 ~ 84160764 (-)
mexican tetra (Astyanax mexicanus) TU104309 True 2603 lncRNA 0.41 5 NC_035905.1 1306481 ~ 1318123 (-)