RNA id: AMCG00007149


Basic Information

Item Value
RNA id AMCG00007149
length 3647
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00007149
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5471104 ~ 5485827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCAGGGAGGCGCCGAGACACAGGTACAGAGCACGGGTCCCTCAGCGCCACGGCCCGGCAGCGGCTGCGCTGGCATTGTCGCTTAGTTGCAGAGGAAGCCTCAGCCATGGCCTCCGACCCCATCACAGACCTGCAGGACGACCTGGGAGAGGAGCCCGCCAATGCCTTGGACCAGCTCAAACTCTCCCCCCTGGAGGACAAGAACTGGCCCTCTGACGACGTGCAGGAGATGAGCAAGTCCGAAACGGACGACTCCAAAAGGTTGGACACGTCTCTCCACTTGAAGTGGGACGATCCCTTTTATGACATCGCCAGGCATCAGATCGTGGAGGTGGCAGGTGATGACCACTACGGCAGGAAGGTGATCGTGTTCAGTGCCTGCCGAATGCCCGATCATCATGTGCTCGACCATCACAAGCTGTTGGGGTACTTGAAGCACACACTGGACAAGTATGTTGAAAGCGATTACACCCTCATATACTTCCACCACGGACTCACCAGTGACAACAAACCGTCCCTCACATGGCTCAGAGATGCGTACCGGGAGTTCGACAGGAAgTACAAGAAGAACATCAAGGCTCTGTACATTGTGCATCCCACCATGTTCGTCAAAACGCTGCTCATTCTGTTCAAGCCATTGATCAGCtggaagtttggaaggaaaataTTCTACATGAACTATCTGAGCGAGCTGGAGGAGTATGTGAAGTGTGAACAGCTGATCATACCCACGCGTGTCAAAGAATATGATGCAAAGATCAAGGCGGCACTGAAACCCTCGGCCCAGGGACAGAAACCCGCCCCGCCAAGACCCCCCCTGCCGAACCAGCAGTTTGGGCTCTCCCTCGTGCAGTTAAAGGAGAAGAGTCCGGACAAAGACAAAATCCCCCTTGTGATGCGAGAGACGATCGGCTACCTAAAGGAGCACGGTCTGAAGACGGAAGGGATTTTCCGAAGGTCCGCCAATGTGTCCCTGGTCAAGGAAGTCCAGAACAAGTACAATACAGGAGTGCCAGTAAATTTCCAAGAGCAGGATGACGTCCACCTCGTGGCCGTCATCCTCAAGACGTTCCTCCGGGAGTTACCCGAGCCCCTCCTCACCTACCAGCTGTACAATGACATCGCCAACTTCCAGAATGTGGAGAGCAGCTCCCAGGTGGCCGTGATCCTCACCATGCTGCAGACTCTGCCCGATGAGAACTACGCGGCGCTCAAGTACCTCATGCAGTTCCTCGTAACGGGCTCCGCGGGCCGCCGACGGGCTTCGCCTGAGGACTGGTGTTTAACCGGGGACTGTAAAGATAAAAACGTGACCGAGCACAGCGCCCAGAACCGGATGGACTCCGCCAACCTGGCCGTGGTGTTCGGACCCAACCTGCTCTGGGGGCAAGACGCCGCCATGAGCCTGAGCGCCATCGGCCCCATCAACAACTTCACCCGCATCCTCCTGGACCACTACGGCCAGGTGTTCGAGGGCAGCAGCCCGTAACCGCGCGGCCCCCCAGCCCAGCCCCGCCCCCACACTCCCCGGGAGCGCACAGTATTGTCCGGTGCCAAGTACGCTCCGTGTTAAGAGTCGTATACAGGAATCACGAGAACACAAGATGGAAACGGGAATCGCTCCGACTGCAGGAAGCCGGCTTTCTGTTCTTAAAAGCTCTTAACTGCCGGCCTGGGAAAGCATACCGCTTAGTTTCGGCAAATCTCTCTCAACTCAAATAAGaagccaatgttttttttctagctCTTCTATTACAATCCCAGTTCTGACACTCCCAGACCGGccttttactattattatggtACATTAAACACTACACTGATGTAGGTACCACGAGGACTGATCTCACTCTGGAGGCATTAAGCTCACGTACTGCTTCTCCACTCCTTTAGTGATTTGTCTGAGAGCACACAGGCGACACAGAGATGGTTTATAATGGTGCATCTCTGCATgtaaacagctttttttttttttgctggggGTTCGGGTTGATTCACACGCTCGGCTAATAAGATTTAAGCTGAAGTTCCAGCAAACATGCAACACATGATTTCCTGATTGATAGTTTATTTTACgagatggaaaaatacattcctgTTAGAGGAACGGACATGGTTTCTAAGTCTGAGCATTTTTAATGGCTATACAACTGTGTCATTTattagaaaatattgtttttatgttacaatattgttgaaatatatatattattgatttatttccttcaGTATTCTCTTTGGAACTTAGAGACATTCTGGACCTCAAAGTGAAGGTGGACAGTTTTCTTTGACGTTTTGCTGTTGATATTTTTCTATCGTTGCCTCTCAAGACTCTTATCTTCTTGTCCAGTTTAATATCTTCCCGTTTCTACAGCTTAGACTCTGCTCTGTCtggtttacaatatatatttacaatatactcTCTTTAAATCGTATACTTTGAGTTATAGAATGTTATTTTGTCCTTCCGAACTAGTTTTTGTATGCACTATTGTGATTAGTTTGATCAAAACGTGTCTTTGGGAatttttgaaagattttttaaaatttgattgTCACGTCAAAAAACGGAACGGATTATTGCAAAACACTAACGATCCAGACAGCTCATTTAACAGAGCCAGTGTGATTGTGGCCAGCCCTTGTCTTGGGCCTCCAAATCCAAAACATGCGGCAGTTTCCACCGATAGAACCCCCCCATGTCCTTCCTGAAGCTGTTCCTCTGGATCCCCCAGCTTTCAAGCACTTCCGCTATCATGCGTCTCTCACTTGTGATTATTCTCTCCTGGCAGCTGCAGCCGGGACAGGAAACGATGCGGCTTTTTGCTTTCGTTGACAGCAGCTTTAGATCTGGAATACAGTTAGATGTGATGTGGGTCTGCCGTGACTCATTCAGACTGAACTGCGCTGGTCAAGTAGAAGCCACACATGGGTTTGATTTggagattgattgattgataggtGTGGtcactttttccccctcattgttttttaaaggtacTTCTTTGGTATGCTTATTTGTTTAACTGGTGTTCAACTGCTCTATCTAAAGATACTTGACATCTTTTTACTTCTTTAAAGAGTTTGAAGATTCAAGCATAAAAAAGTCCAAACTATGTTATTTACCTGACACTGAACATTTTGTATTGGGGTCTCGAAGAAAAACCAGGGGGACGTATATTCAAAGATGATCCTGTTTgataaaggctttttttttggtttagagTAATACATCTATTTACTCGAGTGAATTCAGTTGACCTCCAGTAGCCGTGATGTTTTACTAGCGATTAATTAAGACTGAGAGCCATGCAGTGCGATCAGCTGTGTGCCTTATTTCAGTGCAGGCAAGAAGACAGAGAAACCGATGCTGTTCGAATGCCATCGGTCAGATACCATGCGGTTGTGTTGCCATGTGAATCTGTCACCCGTTTTATGTACTGTGTCGCTGCGTCTTGTGAACTTTGTAAAGAcagataattttatttttctgcggCCGTTGCGGCGAAAATAAAATGCGGTTCTGCATTTGTCCTGCTTTAAGAAGCCAAattcctcctctttgttcttCAAGGTTGACCTTTTTTTATCTGTTGTGAATTATACAGCGATTGTATTGaagtatataataaatattgaagctgtt

Function

GO: NA

KEGG:

id description
K18470 ARHGAP1, CDC42GAP; Rho GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26825 lncRNA downstream 338562 5132328 ~ 5132542 (-) True G21462
TU26775 lncRNA downstream 443378 5027202 ~ 5027726 (-) True G21423
TU26771 lncRNA downstream 507544 4963357 ~ 4963560 (-) True G21419
TU26770 lncRNA downstream 511351 4959516 ~ 4959753 (-) True G21418
TU26764 lncRNA downstream 525384 4942071 ~ 4945720 (-) True G21414
TU26919 lncRNA upstream 9522 5495349 ~ 5495735 (-) True G21522
TU26941 lncRNA upstream 29159 5514986 ~ 5515971 (-) True G21535
TU26943 lncRNA upstream 31400 5517227 ~ 5518751 (-) True G21537
TU26942 lncRNA upstream 35788 5521615 ~ 5523677 (-) True G21536
TU26960 lncRNA upstream 73767 5559594 ~ 5562208 (-) True G21550
AMCG00007145 mRNA downstream 23734 5438262 ~ 5447370 (-) True AMCG00007145
AMCG00007139 mRNA downstream 151865 5308415 ~ 5319239 (-) True AMCG00007139
AMCG00007140 mRNA downstream 166973 5302051 ~ 5304131 (-) True AMCG00007140
AMCG00007138 mRNA downstream 262068 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007136 mRNA downstream 319122 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007153 mRNA upstream 3368 5489195 ~ 5493804 (-) True AMCG00007153
AMCG00007151 mRNA upstream 11121 5496948 ~ 5501797 (-) True AMCG00007151
AMCG00007152 mRNA upstream 41155 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007150 mRNA upstream 94957 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007156 mRNA upstream 107047 5592874 ~ 5605868 (-) True AMCG00007156
TU26789 other downstream 413698 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 421584 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 422265 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3300534 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3325289 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 330982 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 521813 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 2013620 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2907369 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4701487 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile