RNA id: TU26764


Basic Information

Item Value
RNA id TU26764
length 1262
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G21414
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 4942071 ~ 4945720 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NAGATGGCAAGATTAATTCCAAGACCTTTGTTTCGATGTGATCAGACTCACCTACATGGGGTCTTTTCCATCACGTCAAAACTGTCAAAAGCAGAGCAGCACACAGTCCAGAGGGTTTGGACCGAATTCAGTTCTCAAAAGGCAGGATTATAAATCGTCTCACCCTGATGAATGGGAAAACTCATGCCTCATCAGGCATCACAGATATGGTTGAACAGCTGAATGCATTCATTGAAGACAGGAATCTGGACATCAATACCAGTGACTGTGCACCTGTCAGGGatgttgtaaaaatgtaacagtGATTTCCTTGAACTCAATGAAGAACAGACAGCTTCTTATAAGTGGATTAATAACCCCTTTATTAAAGCACAGAGGTTTACACCCAGAAACCaccttagaacataagaacaaaagaaagtttacaaatgagaggaggccattaaatccatcatgctcattttatgtccattaataacctaagtgatcaaggatcctatccagtctgactttaaatgttcccaaattttcagcttcagccacattgctggggagtttattcagattgtgacaactctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgatgttgaagacttggatcaagtccccacgtagtctcctctgttccagATGAACCACTTGACAAATACGATGTTGAACAGGAGACCCTTTCTGGCAGGACGGTCTCCTCCGGACCACGAAAAACCTTCTTTAGCCCCAGGAGTTTCGGGAATGGAGAGGCAGAGTGTGGACTCAGGCCCTTGTTcgagaaagacaaaaaagaagaTCAAACGGAGAGGCGGTTGTTTCAGACTGACCACCAGAGACTAACTGTGGATGGGGAACTGGGCAGTGCACCATGGCAGGTGATGTTATACATGAAGAAccctctggagctgctttgcggGGCCAGTCTGCTCAGTGACCAGTGGATTCTGACGGCTGCTCACTGCATTTTATACCCCCCTTGGGACAGGAAATACACTGCGGATGACATCCTTGTGCGACTGGGAAAGCACTCTGCTGTCGAGTAAGTAGGAGTCGGTGGGATGAGATTCTCAGATACTCCTGCTGTAATTCTGGGGTCTATTCTCAGTGCACCTCCTGCCTGGGACAATTCAGGTGGATAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26694 lncRNA downstream 231145 4681049 ~ 4710926 (-) True G21367
TU26693 lncRNA downstream 259609 4681049 ~ 4682462 (-) False G21367
TU26603 lncRNA downstream 568946 4357713 ~ 4373125 (-) True G21286
TU26560 lncRNA downstream 662502 4279316 ~ 4279569 (-) True G21249
TU26383 lncRNA downstream 1439226 3501883 ~ 3502845 (-) True G21122
TU26770 lncRNA upstream 13796 4959516 ~ 4959753 (-) True G21418
TU26771 lncRNA upstream 17637 4963357 ~ 4963560 (-) True G21419
TU26775 lncRNA upstream 81482 5027202 ~ 5027726 (-) True G21423
TU26825 lncRNA upstream 186608 5132328 ~ 5132542 (-) True G21462
TU26919 lncRNA upstream 549629 5495349 ~ 5495735 (-) True G21522
AMCG00007131 mRNA downstream 10449 4925129 ~ 4931622 (-) True AMCG00007131
AMCG00007133 mRNA downstream 21461 4918537 ~ 4920610 (-) True AMCG00007133
AMCG00007132 mRNA downstream 23578 4895642 ~ 4918493 (-) True AMCG00007132
AMCG00007130 mRNA downstream 48775 4884584 ~ 4893296 (-) True AMCG00007130
AMCG00007122 mRNA downstream 240757 4684255 ~ 4701314 (-) True AMCG00007122
AMCG00007129 mRNA upstream 2785 4948505 ~ 4958670 (-) True AMCG00007129
AMCG00007137 mRNA upstream 167542 5113262 ~ 5121365 (-) True AMCG00007137
AMCG00007136 mRNA upstream 203483 5149203 ~ 5151982 (-) True AMCG00007136
AMCG00007138 mRNA upstream 221175 5166895 ~ 5209036 (-) True AMCG00007138
AMCG00007140 mRNA upstream 356331 5302051 ~ 5304131 (-) True AMCG00007140
TU26061 other downstream 2771501 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 2796256 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 3989009 952236 ~ 953062 (-) True G20630
TU25699 other downstream 4093782 845929 ~ 848289 (-) False G20609
TU26783 other upstream 95939 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 96800 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 111067 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 871089 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 1061920 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile