RNA id: AMCG00009479


Basic Information

Item Value
RNA id AMCG00009479
length 2172
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00009479
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39277091 ~ 39302785 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGAGCTAACACACACCATTGCAGCAACGTAATAACATTAGCTGGCATAATAAGTCTCTattgagtatttattttgagaCGACTGCGGACGAATACACATGGACACGGGGAGTCTTGGCAGATTTGGGCTCTCGCTTCCTCAGCACGCACCTCCTGCGCAGGCACACTGACGTCACTAATGATTTCTAATGGAGTGCGCCAGCCGTTCTTATTGCGCGTCATAGTAAAGTGCCTTTCTCATGTGTTTCACTGTAACGAAGTGAAATGACGAAACAGTGTGAAATGCACGCTTTTAGCTGCCGTGTATAAAAGCAGTCCTTCTCCGCCAAAGTCTCTCCTGTCTCGCTTTCACTTTGCAACTGTGCTTCCGCATCGCCAGCAGAGGAAGAAGGAGCATCACCACCACACCGAGAGGACGGCTGTGTTCATCCCTGCTCTTAATGCCTTACACACGGCAGAATTAGCAACTCTGTAACGCAGTGATCGGTGCTCAACTAGGCAGGAGCGGATGTGCCACTGTCTGAGCGGTAGctATTAAGCGCCTGCTAATCATCCTGACAAGAATTGCCTTGGATTGGAGTGTCTGCCTCAGCTTTTAGAGATGAGACCAAGACAACGGGGAATTAATGTCGGGCTGCTGTTGCTCATTTCCCAGATCTATCAGGTGGGATTCAACAACATCCCCCCTGTGACTCTGGCTACCCTGGGCTTGAACATTTACCTCTTTCTGGCACCTCTAAAAAACTTACTGAATGTGTGCATCAGTGTGCAGCACGCCTTCACCTACAGGGACTGGCAGCGGCTCCTCTTTTCCCCGTTTCACCACGCCGATGACTGGCATCTGTACTTCAACATGGTGTCCTTGCTGTACAAAGGGGTACGCCTGGAGAAGAGGCTGGGCAGCCCCTGGTTCGGCTACATCATCGccgttttctctctcttgacTGGCGTCATGTACATACTTCTGGAGGTGGCACTGTCCGAGGTCACCAATGACCCGTCCTACAAGATGCAGTGTGCTGTCGGATTCTCAGGAGTTTTATTTGCCTTGAAGGTGGTAAACAACCATTACTTCCCAGGCGGTGTCACTCATGTGATGGGCGTTCCAGTCGTCAATAAGTACGCCTGTTGGGCAGAGCTGGTGCTTATCCATTTTATGTCACCGGGGACTTCGTTTGTTGGGCACCTGGCAGGCATTCTGGTCGGACTGATGTACACCATGGGACCACTAAAGACTCTAATGAAGACAAGTGcagGATACAGTGGCTATCAGGCCCAGGATCCATACAGAGGCTACGATCGCCACTATCCATCCCAGCCCCACGCCTGGAATTCTGGGTACAGACCCTCCCAAGTGTACACTGGGGGGCTGAGCGAAGAGGAGCAGTATGAGGCTGCGGTGAGGGCCAGCTTGAACGACAGAGGTGGCTCTGCTGATGGAAGACGGCCATATGGGTTTAATATTCCAGCTGAACCATCAGCTGCTGAGGAGATAAGACAACGAAGATTCAACAGATTTGCGAGATAAAGCGCAGGAGAACTCCAGGCGCGGTGAATGATCAAGAACTTGTTTGCTCctggcacagaaaaaaaaagaaatcaaaatgaacTAATCTACAGCCAGGCTGGTGTGCGTTACACACGGCTCGATTGTTGACTGAGAGAAATGCAGTGTCGAGATGAAGCTGCTCTTTAGGGGTGGGTTTACAGCTGGGTAGCAGCGTGTGCATCCCATGCCAGACGGATGCTTAAATGTTGAACCGGCTATTTGTGCCATGTGCACACGGTGGTGATGGATGCAGGCATTTTCACACGCCAGCGATTTTGCCAACGATAAATGTGGAATTTGAGACCGAGACGAATGCCATCAGTTTAAACCTGCGTCTGCGCTGGATAATATCGGGGCCATAAACTGTGGGCAGTAATTGGGCCTGCAgttgaaatgcatttgtgtaggctttgaaaatatttcGACACTGTAGACCACTagatgcttatttttatttctccctcATGCACAGCTGTCTTAAGGAGAGGAAATCCCTTTAGGTGGCAGTTCTAATTATAAAGTAAAATGCAGAACATCTGTGTGAATGGAAAATGTGCCAAAGAAAATGTCTCAATTCTGTATTGCTTTCCCCAACCAAATATCTCACAAGTTGATGcagac

Function

GO: NA

KEGG:

id description
K09651 RHBDD1; rhomboid domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71480 lncRNA upstream 442146 38757380 ~ 38834945 (+) True G57175
TU71465 lncRNA upstream 643740 38633097 ~ 38633351 (+) True G57164
TU71462 lncRNA upstream 648956 38627919 ~ 38628135 (+) True G57161
TU71304 lncRNA upstream 996612 38202794 ~ 38280479 (+) True G57036
TU71255 lncRNA upstream 1143125 38130082 ~ 38133966 (+) True G56995
TU71626 lncRNA downstream 552 39303337 ~ 39306230 (+) True G57286
TU71627 lncRNA downstream 3703 39306488 ~ 39306774 (+) True G57287
TU71673 lncRNA downstream 156613 39459398 ~ 39459676 (+) True G57329
TU71734 lncRNA downstream 503798 39806583 ~ 39806928 (+) True G57378
TU71769 lncRNA downstream 572096 39874881 ~ 39875170 (+) True G57401
AMCG00009477 mRNA upstream 121997 39133854 ~ 39155094 (+) True AMCG00009477
AMCG00009474 mRNA upstream 376554 38869487 ~ 38900537 (+) True AMCG00009474
AMCG00009473 mRNA upstream 433780 38841956 ~ 38843311 (+) True AMCG00009473
AMCG00009469 mRNA upstream 459425 38814035 ~ 38817666 (+) True AMCG00009469
AMCG00009466 mRNA upstream 501481 38763771 ~ 38775610 (+) True AMCG00009466
AMCG00009484 mRNA downstream 75464 39378249 ~ 39393565 (+) True AMCG00009484
AMCG00009483 mRNA downstream 90784 39393569 ~ 39401188 (+) True AMCG00009483
AMCG00009482 mRNA downstream 101544 39404329 ~ 39405173 (+) True AMCG00009482
AMCG00009481 mRNA downstream 106707 39409492 ~ 39415596 (+) True AMCG00009481
AMCG00009480 mRNA downstream 132171 39434956 ~ 39437017 (+) False AMCG00009480
TU71381 other upstream 819499 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1660808 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 1909420 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 3887764 35388914 ~ 35389327 (+) True G56536
TU70456 other upstream 5258276 34015670 ~ 34018815 (+) True G56369
TU71670 other downstream 132115 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 645221 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 799598 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 1688017 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 2733233 42036018 ~ 42078241 (+) True G57830

Expression Profile