RNA id: TU71626


Basic Information

Item Value
RNA id TU71626
length 2894
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G57286
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39303337 ~ 39306230 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAACAACTGGGCAGTCttttattaagaacataagaagaaagaacataaagtttacaaacgagaggaggtcattcgccccatcgtgctcgtttgatgtccattaataactaatgatccaaggatcctaccagtctgattttaaatgttcccattgTCTTTCATTTGTGTCTTGTATTTGAAGACCTACAGTTAAATGGGAATTTTggttaaaatgattatttagGAAAACATGTTATACGTATAAATGTACATTAGGTTCTGCCAATATCGCATTCAAACTCATGTTAACTCATGCAGCCTTGTTGACTGGTTCACAAATTGATTTAAACCAGTCTGTAGTATTTCAACTGGTATGAACTAACTGTAATGTGTCCATTTTATCCACATTAAATCTGCAGTGGCTCATTTAGGCcattacataataaaacaacagttaTGTCATGAATATATCTCAGGATCTTGATTTTACAAGCCATTATCTCTTGAACATGAGATATTGGAATGAATATCAAAATCATGATATAAGGAATCTGGTGATCAAGACCTAACGGTGGGTAATACTGAGATCAACTATCTTGTGAtcacaacaaaattaaaacccttttttgtgtgtattaagTCATGTCTTATGATCCACCATACACATTTGTTCACAATTTGTAAGCTGCAGTGTCCAGAGGGAAGTAGGCACAACACTAAATAGGCAGGATTGCAGAAAACCCAGTAATACTGCTGTATTTAGGGATTATTTTGTGCATGTTATTTTCTATTGAACTCATGGCTCATAGTCGGGCTAGAATGATAACCCAAATCTGGATAATAAGTTGGTGGGTACATTTGTATGCCTATGTGTGAGAgtacaaaatagaaaatcaaaagaaacataAAGGATTCATCCTGACAAGACTTgatattaattgattaataagtctaaaaaacattcaacagaacctcttcattaaaaataaaatgtgtaacaaaAGTGTGCCTTTCCAACATGCATattgaattgttatttttatgaatttaattgTTATTCATTGAGACAGTGCATTCTGATAATTAAATTACctttattcaataaatatataaagatttgaaattatttaattcatctAAAAATGTTTATAGTGAGAATTGTTTATTAATAGTTTATTCTATAAAGGGTGGTATTCAAGGAGTACATTTATGGAAGATTTCTGTCCGGTCCCGTTCTGACCGTTAAAATAAGTATACTATCAATAAAACTGatgtacatttccattatttcaCACTTGGTTTTGTATCTATCtctgtatctatatatagagatatatattaGGGATGGGTAGTATATCAGTTTTCCATGGTTTAGATACAGTACGGTATtggtaaaatatttatattatcctACATAGTGTAATACTAGCCGAGCAGTCTCCGTTATTTTAGAAGCTTACTGTTGACATTGAACACGCATGTGTAGAACTCGTCTCTCACTTCATGAACCAACTCCCTTCAGCGTAGCTTCCTGCTCATCACCATCACTGCAGTTCGGCATTAGCAATCTGCTTCCCAATGAAGCCGTGATGACTCGAGCCTTTGAAAACAGTGCAGTGTTTGAGGAGTGTTGCTGTGTAGACGCTGCAGAGTGCTGGTTTGCGCTCGTGGTGGAACAGATCCAACCTTTTTACAGGGACCATCACCCTGTAATTTATGCAGACATCTCAAAAGTAACTTATAGACAGTACAGGTATACGGCGGCCTGCTCAATCCGCTatgcacagatttgttttagcACAAGTTGattcaattaaatttaaaactaaaactgaaatatagtAGACCTATAGAGAATGAAGTTGCATGACCTTAAGGTAACCGCGGTAGTTTTGCTTTTGGTTATCGTTTCATGGAACTTGTtatcttcataaaaaaaaaaatgtatgtgcaatCACCATTTCAAAGAACCCCAGAACAAGCACCTAATGTATAATTTGACATTTACAATTATGTAGTGTGATTTTAGACAGTGCAATCATATGTACATATAATAGAACAGAATatcaagtacaaaaatacatggattaaaataatacaagtgtTGTCATATTCCTAGGCAGAAGCCCTTTGAAAGCCAAGTGTGGGGGAAATATAAAGCAGATGGAAGGATaatttttccatttgctttatACTGTATCGATTATCTCTAAAGAACAGGATTTGCAGACACTAATATCTTCTGTGCATAATAATGTGCATTAATCGAGGTTTGGAAGACCATCGCCACACACTACTCCATGTAATAAAACACCCGCTCAGTTTCACAGTAAAGACTTTGTTCAGGCGCTCTGGACTCTTTTTCGAATAAAGGGTACCTGCAGTACTTTTTCCTGCCAGTCAACCATTAACTATTGTTACTGGAAACACAATCTTCAGGAAAAATCACTAGTATCAAATCTTTGTCAAGTAAGTTAATCTTCTGaacctgtaataaaataaatccacattgCCTTTTATGAGCGTTAATCGGTGAAACTAAACTGGAGTTGGTGTTAATGTTTTGGGTTTTGCTCAGTGCTCGGTGACCCTTCATGTAAAGACACTTCCCTGCTTCCTGAGAGTGTCCGCTGGTGGTCAAAGGGGTTGTTGGCTGTCACTCCTTCATACACACATGGCATCTGCTGACCCTCTGCCTCTTCTGATGCTCCTCTTTGAGCGTCTCTGCTGGAGTGTCTCTGAACTGCTCGTGTGTCTTCATCCCGGTGAGCCAGAAGCTGTACTTGTTATTAAAGTAGTGGCAGGTTCCCTGGGCGCCTTGGCATTCGATGAACGGTGTGGTCCGGAAGTCCTGCAGGCAGCTCCCCGGCGACGTCAGGGACTGCCCCCCTCCCTCGTCCCCTGCGGCGGTGTG

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71480 lncRNA upstream 468392 38757380 ~ 38834945 (+) True G57175
TU71465 lncRNA upstream 669986 38633097 ~ 38633351 (+) True G57164
TU71462 lncRNA upstream 675202 38627919 ~ 38628135 (+) True G57161
TU71304 lncRNA upstream 1022858 38202794 ~ 38280479 (+) True G57036
TU71255 lncRNA upstream 1169371 38130082 ~ 38133966 (+) True G56995
TU71627 lncRNA downstream 258 39306488 ~ 39306774 (+) True G57287
TU71673 lncRNA downstream 153168 39459398 ~ 39459676 (+) True G57329
TU71734 lncRNA downstream 500353 39806583 ~ 39806928 (+) True G57378
TU71769 lncRNA downstream 568651 39874881 ~ 39875170 (+) True G57401
TU71800 lncRNA downstream 634992 39941222 ~ 39943036 (+) True G57428
AMCG00009479 mRNA upstream 552 39277091 ~ 39302785 (+) True AMCG00009479
AMCG00009477 mRNA upstream 148243 39133854 ~ 39155094 (+) True AMCG00009477
AMCG00009474 mRNA upstream 402800 38869487 ~ 38900537 (+) True AMCG00009474
AMCG00009473 mRNA upstream 460026 38841956 ~ 38843311 (+) True AMCG00009473
AMCG00009469 mRNA upstream 485671 38814035 ~ 38817666 (+) True AMCG00009469
AMCG00009484 mRNA downstream 72019 39378249 ~ 39393565 (+) True AMCG00009484
AMCG00009483 mRNA downstream 87339 39393569 ~ 39401188 (+) True AMCG00009483
AMCG00009482 mRNA downstream 98099 39404329 ~ 39405173 (+) True AMCG00009482
AMCG00009481 mRNA downstream 103262 39409492 ~ 39415596 (+) True AMCG00009481
AMCG00009480 mRNA downstream 128726 39434956 ~ 39437017 (+) False AMCG00009480
TU71381 other upstream 845745 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1687054 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 1935666 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 3914010 35388914 ~ 35389327 (+) True G56536
TU70456 other upstream 5284522 34015670 ~ 34018815 (+) True G56369
TU71670 other downstream 128670 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 641776 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 796153 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 1684572 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 2729788 42036018 ~ 42078241 (+) True G57830

Expression Profile