RNA id: TCONS_00009265


Basic Information

Item Value
RNA id TCONS_00009265
length 3169
RNA type mRNA
GC content 0.53
exon number 20
gene id XLOC_004678
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20412293 ~ 20482061 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATAAGTGTCTGCATGGTCATCCCAGCTGGTAATACGAGTGGACACTGAACTCTACGTAGCTTCATTTGACTGCGTCTCAAAGCCTTTACAGCTGCCTACACAGACAGTATCTTTGAGCACAACCGACGACTGTCAGTGCTGTTTATATAGTCATCGCACTATGTTCTGGGACAGCCCACAGTTTTCACGTTCATGCCATCATGATCAGCCCGGAGCTGCGCCGATGAGAGCActgaaacacactcacacacacacacacacgcacacgcacacaaagtGCCCGACTCGGATGGAGTGATCAGCCCGCTGCCATGCACTCTTTCCCGTAGTTGTCACGGGCTGCTGGCATACGTGGAAAAACACTCACTCCCGCTTATGAGACCAGTTGCAACACGGAATGACATGAAACGAGCACCGCTACTCACCGGAGCTAACTTTTTTCCACACTGCTGTTTTTTTCTCTCCCGATTCGGCTAGTTTTCTAGCTGCCTGAGCTAACCGTAAACCGGgctgttttaatgtaattagCCACACGACTTCACTATCGTGCACAAGGATCTTTCGGCTCATGAGGAATCGACGAACACACGTCTTTACTGGGTTTTGAGGCCGACGACACTAAAATGAAGAAACAGTTTAATCGGATGAGACAGCTCGCCAATCAAACAGTTGGCAGagCGGAGAAAACAGAAGTCCTCAGTGATGACCTGTTACAGATTGAACGCCGTATGGAGTTGGTGCGGGTCGTTTCGCACAACACGCACAAAAAAATGGCTGTGTGTTTGCAGGGGCAGATTGGCACTGATGCTGAGAAGAGACATAAAAAGCTTCCACTGACAGCGCTGTCACAGGCCATGCAGGACGGTGGGAACCAGCTGGGGGAGGAGTCTCTGATTGGGAAGATGATGGAGATGTGTGGAGATGCGGAGAACAGACTGGCCTCAGAGCTGATGCAGCATGAGATGAACATCGAGAAGGAAATCTTAGACCCCCTTAATCAGCTAGCAGAGTTTGACATTCCTAACATCCTGAAACAGAGGCGGCAGTTAGCCAAGCTGGTTCTGGACTATGATTCTGCCCGGGCAAGGTGGTTGCAGGCGACCAAGTCAATAATCTCAGgaacaaacacacaagcactgACAGCCAAAGCAGACTCGCTTAAAGAAGAAGTTGACGAAGCTATGAACAAAATGGAGCTGTGTAAGgatCAGCTTTCAGCAGATATGTACAACTTCTTCTCAAAGGAGGCAGACTATGCCCGCTACTATGTAATGTTATTAGAGGCGCAGGCGGATTACCACAGAAAATCTCTCACCTTGCTCGAGAGCGTCCTGCCAAACATTCAGGCTCAACAAGACTCATGGAGTGAGAAGCCAGCGTTTGGGACAGCTCTGGACGAGCACCTGAAGCGCAGCAGCAGAGAGATTGCTCTGCCCATAGAGGCATGTGTCATGATGCTACTGGAGACTGGAATGAAAGAGGAGGGTCTGTTCCGCATCGCAGCAGGAGCCTCTAAACTGAAGAAGCTGAAGGCTGCTCTGGATTGCTCCACCTCACAGCTGGAGGAGTTTTACTCAGATCCACATGCTGTTGCTGGGGCACTGAAGTCGTATCTCAGAGAGTTGCCTGAACCTTTGATGACTTACCAGCTGTATGATGAATGGATACAGGCCTCCAATGTTCCTGACCCAGACAAACGATTACAAGCTTTGTGGGTTACCTGCGATCAGTTACCAAAAAACAACAAGGCAAACTTCAGATATCTTGTTAAGTTCCTCGCTAAACTTGCACAGGAAAGTGACGTTAACAAGATGACGCCCAGCAACATCGCCATTGTCCTTGGACCCAACTTACTGTGGGCCAAAACTGAGGGGAGCCTAGCAGAAATGGCTGCTGCAACCTCTGTCCATGTGGTTACTATAATCGACCCCATCATCCAGCATGCGGACTGGTTTTTCCCTGAGGATGTGGATTTTAATGTATCCGGCATGTTTTCGATGCCCGCACCCCTGCCAAACAATGTCAATCACCTGACGCCGCCAGATTATGACTCAGGCACCATAGAGAGAAAGAGACCTGGCAGTATGGTTGGTCCAGATGGGGATATGCCCCGAAGAGACAGCTCTGCTAATAAATTAATGGACCACAATCCTCGTAGAGGCAATACTGTACCTAGAAAGCAGCACGCTTCGCCTGCCTTCCAGCCTCCGCTGCCCCCGGTGGAGGCTGCGGGTGGTGCAGGGGGTCAGTCCACAGCTGAACTCCTGCTCCAGCAGCCTGCGCAGGTGGGTCTGGGCTTAGAGAACTGCCAGCCTGGGGTGGCACTGGGGATGGCTGCCCTGGCAGCAGCACAGCAGCTTCTAGCACAGCATACTGAGGAGATCAGttcAAAGAGCCGAGACTCTGCATCCACTCCTCCTGCTCAGAGAAATGGCACTGGAGGCTCAGGACAGCTGAGTGTGGGGACCCCTGTGGCGGGATCTACAGGACCCAGTCCTCACATGACACGCAGAGGTACAAAGAAGCCTGCTCCAGCTCCACCTAAACCAGCCAACCCTCCACCAATCCAACCAGCCAATCAGCCCGTTCCACAACAGACCCAATCAGGCACCCCTCAGTCCTTCAGCCCGTCCCCTAGACCGCTTTCCAGTTACTCTCCAACCAATCTGAGCCCCACACAGACCCAGGCCCAAACCAACACCACCCCACGCCGCCACTCCAGCAACCAGCCTCCCATTCAGGCACCCAACCACCCACCTCCACAGCCCCCGACCCAAACCACTCCACCTCCCCAAACCGGCATGCTTGGTGACCAAGCTGAAGACCCCTCGCCTCCACATACCCCCACCCCACCGAGCACCCCTCCTCCCACAGCAGTCTTCCAGGACAGTCCTAGTCCCACCGCGCCTCCGGTGTTCCAGTCAGGGTCGCTTCCACGCCCCAGGCCTGTGCCCAAACCACGCAACAGACCCACTGTCCCCCCTCCGCCTCAGCCTCCAGCCATAGGAAGTGACAGCAATGGAATTTGCAGCGCTGCCTTCAAAACAATGGAATCGGGGATGACATTTAAAGCAGTGGGTCGAGCTCTCATTCCGGACATCGCAATTGAGAAGCCTGTAACTCACCTGAAGGACGCAGACCTCGACACAGAGAGCACCGTACTGTAA

Function

GO:

id name namespace
GO:0035020 regulation of Rac protein signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-56 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of Rac protein signal transduction and regulation of actin cytoskeleton organization. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including axis; myotome; nervous system; notochord; and solid lens vesicle. Orthologous to human ARHGAP17 (Rho GTPase activating protein 17).

Ensembl:

ensembl_id ENSDART00000115015

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009263 lncRNA upstream 65658 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA upstream 65658 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00010916 lncRNA upstream 146828 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00010733 lncRNA upstream 953008 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00009244 lncRNA upstream 1023915 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010919 lncRNA downstream 9558 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010918 lncRNA downstream 9558 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010920 lncRNA downstream 9558 20491619 ~ 20504801 (+) False XLOC_004679
TCONS_00009268 lncRNA downstream 10823 20492884 ~ 20495870 (+) False XLOC_004679
TCONS_00009269 lncRNA downstream 10823 20492884 ~ 20500329 (+) False XLOC_004679
TCONS_00009262 mRNA upstream 58752 20342451 ~ 20353541 (+) False XLOC_004677
TCONS_00009264 mRNA upstream 58758 20352400 ~ 20353535 (+) True XLOC_004677
TCONS_00009261 mRNA upstream 75019 20336070 ~ 20337274 (+) True XLOC_004676
TCONS_00009258 mRNA upstream 255279 20149305 ~ 20157014 (+) False XLOC_004674
TCONS_00009271 mRNA downstream 24136 20506197 ~ 20508359 (+) True XLOC_004680
TCONS_00009272 mRNA downstream 70129 20552190 ~ 20564678 (+) True XLOC_004681
TCONS_00009273 mRNA downstream 85321 20567382 ~ 20575381 (+) True XLOC_004682
TCONS_00009274 mRNA downstream 101491 20583552 ~ 20600378 (+) False XLOC_004683
TCONS_00009275 mRNA downstream 105118 20587179 ~ 20596758 (+) True XLOC_004683
TCONS_00009249 other upstream 507878 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 515366 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009245 other upstream 1024020 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009243 other upstream 1026738 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009203 other upstream 1712671 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009270 other downstream 16922 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009286 other downstream 209297 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009295 other downstream 955285 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009299 other downstream 1311941 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 1961568 22443629 ~ 22444772 (+) True XLOC_004697

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_01603848_01622589.mRNA True 2794 mRNA 0.50 16 CI01000063 1603474 ~ 1622786 (-)