RNA id: TCONS_00009269


Basic Information

Item Value
RNA id TCONS_00009269
length 2594
lncRNA type lincRNA
GC content 0.49
exon number 2
gene id XLOC_004679
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20491619 ~ 20504801 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTGCCTTCTGTCTGGAGCATCAGGCCAAActtctgctgtccagaatcaggtggtttgtcttggtcgggcatctcagctgggacctgtccactatgggtgaccctgccggtagctgtgaagtaccagtggcgtagctctcagcatcactgatgcacacaagcccttaCAGCACGTCGGGCTGCAAACcatgtgagggaccctaacctaccctaacccaGCAGCCAACACTAACAACCACTAATGTGCCAAAAAACACTCAGAGGAGACCAGCAACACGCAAGAAACCGCCTGGAAAACCTTGCTAAACGCATGTCAACATTCAAAAGAACCCAAGAGCCGAATATGAACAGCACCGACAATCACCAAAACATCCAGCAATGTGATGAAAACTTAAATAAGATGTCAAATGTGATGTTTTGCAAGCTTATTGTGTAACTATACAATATGTACATATGTGCCCTTGATCCTCCATCTGGCACGAGGATGGCTCAGTGCCTGAGCTTCTTTCTTCGGGGCTCCTTGGGCAGCGGCTCTTTGCTGATGTCCACCTTGATTTGGGGAGCGAGGCTGGACTCAGATCTGCACTCTGTGATGAACACACATCCATCAGGCTGCTCAGTCTCCAGCAGTGCAGGCCGGTCCAGcttctcccacagccgctgcttgatctcGAGGCCCTGCTGGATGGTGTATCGGCCATGGCGCTTCTTCACGGTGGAGTCCATCACACTGCGGTAGATGTGCTGATAGTCCTGCACACTCCGGCCGTGGATGGAGAGCGGCTCCTCCTGCGGACACTCACCCACTGAGGCTGTGGGACGGAAGACAGGAAGGACAGCCGCGTTTCTCAGGTGTCGCTGTTCCAGAGAAGTGTCTGACATGCAGCTGGAGGTGTCCAGCCTGACCGCTGTGGAAGCAGAAGAGACGCACTCCAGCAAGAACTCCTTGAGgagcgtcactcctactgaccagactgtagCTGGAGTGGCATTGTAGCGATGTCTGCGAAACCACTAAGGAGGAAGAGCATATCCAGGAGTGCCTGAAGGACagaagaccacaaacatctgctcaaAATTCTCGACAAATTCTGTTTAGTTGATCAGCAGATgttcacaaacatcaacagaacaTTTCCTTCTGTAACTCAAACCCACCTGtaaagtatttgtaggccgagcgcttcagcagatctccattgccgaagtccagcagcttgatgtccggggactctgtggagatcagcaggttctCTAGCTTGATGTCCCGGTGCAGGACACAGCTGCTCTTGCAGTGTTACAATGCcgcgatcagctgcaccagcactttcttggccGTACGCTCGTCCAGACAGCCGTTCTTTTCACAGAAGCTCTGGACATCTTGGCAAGGAGCCGGACGCTCTAGGAGGCGGACGCTCCAGGATCAGGACGTAGCGCCTGGAAaggtcaaaccagtccagcagctgcaggacacaGGGGCAGGCAGGAGATGAAATGACGCGGGTCATCAGTGCCACCTCTAGCGGCAGCAGACCCTGACCGtcctgcaggacaaaccctccattatatccagCACTGAATCAAACACGGCAAACACCACAGATTCACACcaaaacatacaactttcagtCTCTCGGGGGTCCGGTCCTGCTACATGAacttgatggccacctgcagacagaaaaagcaaagtaaatcacacctgcctgattgagacacatgacatttactgacagcaacatttctaaagcaaGTCTGAATGAAGGAGGGAAGAAAatctcttactggcagtccatcagacctgcggatcccagcaaacacagagccgaatccacTTCGTCCCAGCAACAGGCCCTTCAGGTACAAGTCTGCAacacagaagagcacaagaaatgaagaaGAGAAAACATGCTGCAGTGTcttcaatgacaaatcatttcctAACTGAGCCATAAGATCTGGATGACTtgagctgtgctgacctctgTGAGAGCGTTTGGTCTGTCTCTGGGAGGAGGTGGACGATGTTTGCTGACTGCTGCTTTGCCTTTTGCTTTTGCTGTTCCTCTGGTCTGTGATGCAGAACCAGCCAAATGTGACGGCAGAGGAGCCAAATATCCAGGAGGCTCAGCGGTGCCGTCCCGTGTGTCTGTGTCCAGAGCTGTTGTCTGGGTGAAAGCAGCACTCCTGGGTCTGGAACGGCTTGAGGCTCAGATATAAATCACTCACAGAAACATTTTTCCTGCTCACTTTTATCACACTTTCAGAAGGAACTTGCAGTTTTTATTGAGCAACTCTGCAGTTTCCatcattataattgttttaaagaataaaaacaaacatcaaaacatttttaataaattttttgtttCATGTGAACTTCgatgatattttttatattagtaaAACATCGTACAGCATCATACAGTGACATACTAATGATGAATTAAAAACACTCGCTTCCTCTTTCTTCTcccatgtgggacatggacaatctcctccaacctgcaataaagcaagaaaatacagataaaatatgaaaattcatttaaaacaaagtaaattaaaggaaaaagaaaaacaaaacgaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0030182 neuron differentiation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0048699 generation of neurons biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000152863

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009263 lncRNA upstream 146249 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA upstream 146249 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00010916 lncRNA upstream 227419 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00010733 lncRNA upstream 1033599 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00009244 lncRNA upstream 1104506 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00009278 lncRNA downstream 119870 20620199 ~ 20621100 (+) True XLOC_004684
TCONS_00010921 lncRNA downstream 220768 20721097 ~ 20764173 (+) True XLOC_004688
TCONS_00009291 lncRNA downstream 306568 20806897 ~ 20886482 (+) False XLOC_004689
TCONS_00010922 lncRNA downstream 306586 20806915 ~ 21106987 (+) False XLOC_004689
TCONS_00010923 lncRNA downstream 306680 20807009 ~ 20886482 (+) True XLOC_004689
TCONS_00009266 mRNA upstream 10823 20412293 ~ 20482061 (+) False XLOC_004678
TCONS_00009265 mRNA upstream 10823 20412293 ~ 20482061 (+) False XLOC_004678
TCONS_00009267 mRNA upstream 31132 20412564 ~ 20461752 (+) True XLOC_004678
TCONS_00009262 mRNA upstream 139343 20342451 ~ 20353541 (+) False XLOC_004677
TCONS_00009264 mRNA upstream 139349 20352400 ~ 20353535 (+) True XLOC_004677
TCONS_00009271 mRNA downstream 5868 20506197 ~ 20508359 (+) True XLOC_004680
TCONS_00009272 mRNA downstream 51861 20552190 ~ 20564678 (+) True XLOC_004681
TCONS_00009273 mRNA downstream 67053 20567382 ~ 20575381 (+) True XLOC_004682
TCONS_00009274 mRNA downstream 83223 20583552 ~ 20600378 (+) False XLOC_004683
TCONS_00009275 mRNA downstream 86850 20587179 ~ 20596758 (+) True XLOC_004683
TCONS_00009249 other upstream 588469 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 595957 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009245 other upstream 1104611 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009243 other upstream 1107329 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009203 other upstream 1793262 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009286 other downstream 191029 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009295 other downstream 937017 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009299 other downstream 1293673 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 1943300 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009307 other downstream 2078075 22578404 ~ 22578530 (+) True XLOC_004700

Expression Profile

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