RNA id: AMCG00010989


Basic Information

Item Value
RNA id AMCG00010989
length 1531
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00010989
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6775564 ~ 6782856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCGAACCAATCAGAGAAGCGCTTTAATCCTCTGTCATACGTGCCGGTGAAAATAAACGATTGTTATTGACCAATCATAGTcaacattgaaataaaagtgGACATGGGAGCCAATCAGGTCGATTCTTGAACGGAAGTCCCTACTGCGGATGGAGGTTATGCTCGTGTAGTTGTTAGTGAAGGTAGTTGAAGTAAAgctgtatttcaattaaatatatatattgattagaTTAGACTTTATTCTATATCGAAATAAACATGATCGAGCAAAAGAAGAGGAAGGTGGCGGGGCCCAACGAGATGGCCCTGGTGCCGATAAATAAGAGACCACGGAATGAGTTAGTGGCGGCGGCTCAATCTCAACAAGTCATGCAAATGGGACCCCCTCGAAGCTCCAGTTTGCAGGCGCCTATTATGCTTCTCAGTGGACATGAGGGAGAAGTGTACTGCTCCAAGTTTCACCCCAATGGATCCACGTTGGCATCAGCTGGCTATGACAGATTGATCTTGCTATGGAGTGTTTATGGAGACTGTGACAATTATGCCACCCTCAAAGGCCACAGTGGAGCCGTCATGGAGATACACTATAACACAGATGGCAGCTTGCTGTTCTCGGCATCCACAGACAAAACAGTGGCGGTGTGGGACAGTGAGACTGGCGAGCGCATCAAGAGATTGAAAGGACACACGTCATTCGTTAACTCTTGTTATCCAGCCAGAAGAGGACCGCAGGTGGTCTGTACAGGCAGTGATGATGGCACTGTTAAACTTTGGGACATCAGGAAGAAGGCCTCTGTACACACCTTTCAGAACACCTATCAGGTCCTGGCTGTAACATTCAATGACACAAGTGACCAGATTATCTCCGGAGGTATTGACAACGATATTAAGGTGTGGGACCTGAGACAGAACAAGCTGATCTACACCATGAATGGCCATGGAGACTCTCTGACTGGACTGAGCCTCAGCTCTGAGGGCTCCTACCTGCTCTCCAACTCCATGGACAACACAGTTCGAGTGTGGGATGTGCGTCCGTTCGCACCAAAGGAAAGGTGTGTGAAGATATTCCAGGGAGCCGTTCATAACTTTGAAAAGAACCTGTTGAGGTGCTCTTGGTCTCCTGATGGAAGCAAGATCGCTGCAGGATCTGCAGACAGgtttgtgtatgtgtgggaCACCACGTCCCGGAGAATCCTGTACAAGCTGCCCGGCCATGCTGGCTCGGTGAACGAAGTAGCCTTCCACCCAGAGGAGCCCATAGTTCTTTCAGGCTCAAGTGACAAAAGACTCTACATGGGAGAGATCCNNNNNNNNNNTGGGGGGGGGGAGAACGTGTCACCTCTGTTGCACAGACTGACTTCTCCGAGTGAGGAGTCGCTGTACCAGGTGCCGGAGCATGCCAAAGAAGAGGACCCACTGGAGACCAGCGTGGTCGAGAAGGAGGAGGTGATGGAGAGCATTAGTCCCAAGTTAACCGCCAGCTCCTCGAGTTCAAAGGTGCCAGGTAACCCCTGTTTGTGgaaggggtaa

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K12857 SNRNP40, PRP8BP; Prp8 binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129372 lncRNA upstream 138376 6636963 ~ 6637188 (+) True G103541
TU129371 lncRNA upstream 145574 6628488 ~ 6629990 (+) True G103540
TU129369 lncRNA upstream 148126 6623485 ~ 6627438 (+) True G103538
TU129329 lncRNA upstream 261746 6513312 ~ 6513818 (+) True G103501
TU129289 lncRNA upstream 371261 6400638 ~ 6404303 (+) True G103470
TU129412 lncRNA downstream 124246 6907102 ~ 6927247 (+) True G103567
TU129446 lncRNA downstream 179130 6961986 ~ 6962191 (+) True G103599
TU129466 lncRNA downstream 288577 7071433 ~ 7103189 (+) False AMCG00010994
TU129549 lncRNA downstream 525749 7308605 ~ 7309609 (+) True G103670
TU129564 lncRNA downstream 590819 7373675 ~ 7384727 (+) True G103684
AMCG00010986 mRNA upstream 13441 6754924 ~ 6762123 (+) True AMCG00010986
AMCG00010981 mRNA upstream 265602 6493616 ~ 6509962 (+) True AMCG00010981
AMCG00010974 mRNA upstream 363768 6408918 ~ 6411796 (+) True AMCG00010974
AMCG00010979 mRNA upstream 380080 6387036 ~ 6395484 (+) False AMCG00010979
AMCG00010969 mRNA upstream 723897 6035491 ~ 6051667 (+) True AMCG00010969
AMCG00010991 mRNA downstream 88967 6871823 ~ 6881274 (+) True AMCG00010991
AMCG00010990 mRNA downstream 109541 6892397 ~ 6920667 (+) True AMCG00010990
AMCG00010993 mRNA downstream 221227 7004083 ~ 7022923 (+) True AMCG00010993
AMCG00010994 mRNA downstream 305426 7088282 ~ 7103508 (+) True AMCG00010994
AMCG00010995 mRNA downstream 324429 7107285 ~ 7110941 (+) True AMCG00010995
TU129373 other upstream 132936 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 2133206 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 2691978 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 3195287 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 3332030 3436618 ~ 3443534 (+) True G102947
TU129402 other downstream 134910 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 1765507 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 2747618 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 4035832 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 4883342 11666198 ~ 11671340 (+) True G104382

Expression Profile