RNA id: TU129371


Basic Information

Item Value
RNA id TU129371
length 1503
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G103540
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6628488 ~ 6629990 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaacgggagcttcgtgccctggatgtgcatctcacaaatctccatcaactatcagctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatatatatatatatactgagaaattaattttctcaatATAATCCAGAGGCTTGGTTAAACCTCTTTCAATGGCACAATGAACCATACACACATATTGAAAACAGGCGATTCTTTATACACAACTCATACAGGAAGCTGGAAAGAGAGCGGAAATAGTTGAACCAATAGCTGATGAAGGGCAATGCTTTAGTATTTTTTCctagtttttattgaatgtatttaatctataatgtatacatttattttaaagcacaacaGGTTGGGTCTAAATTTGTTCATCTAAAACGTTTGGTTGATATTGATACTGATATTGATATAAACAACATAACGCCTAAGGAGAAGTGAAAGGCACTACATTGAATCTTTGTGTGATATAGtctcttttacatttaaattatgggCAGGCATGACGAGTCGATGGCAGACTAACTGCGTTCCAGAGGCAAAGCACTGGAAATTCAGTTCTACAGTGCAGGCATGACAAACAGAATTCAGATTTAATCCCGTAATTCACTTTAGCGGCAGCAACTTTCATTTAATCACGCATTATGTAATCAACTAGGACCACTTAAATTTCTTCAGCTTTCCTTCAGTCCTgcactttaattatattttcacctGAAATGTACTAAAGTGACAAGCACCCAGTGAACAGCATTTGTCTTGtaatcttaataaataaactgattcaAATCAGCTCATTACACAGATGGCGCTGCATTTCACTCAGACCTCAGTAGCTTTTAAGGGAAAGAAATAAGGAAACAGACTTGATAACTCAACCACAGCTCCTTTTCCTGCACCACATATCCCTGTCCAATGACATTTCCCCCCTCCACCTTCTCTTTTATTTCCAGTGCTGGGACTAATGGTTGAAAACAACTGAGCTGGAAAAAGTTAAGGAGctagaacttaaaaaaaaaaataataataataataataataataattataattattattataattataataataataaaaaactttttcttttttttccgttttctttttttttgtattgtttttattttgttactttaaaagAGAGTTCTCTTTGTGTTCACAGTCCGTGGAGCAATAGGCACTCTCAGGGCAGCCGCTGGTTATGCATAGAATTCCTCTTGCTTGTCGGGCTTCTGGTAGGTTACTGTGGCTTGCTTGGGCTCCTCCAACGTGTAGCTGCCTTCATCCTTTTTCTTCATTCGGTACACCAGCAGCATGACGAGGAAGGCAGCGAAGAGGGCCCCAACCACACCACCCACGATCACAGCTATGCAGAGAGAAACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129369 lncRNA upstream 1050 6623485 ~ 6627438 (+) True G103538
TU129329 lncRNA upstream 114670 6513312 ~ 6513818 (+) True G103501
TU129286 lncRNA upstream 224185 6400638 ~ 6404303 (+) False G103470
TU129289 lncRNA upstream 224185 6400638 ~ 6404303 (+) True G103470
TU129281 lncRNA upstream 234184 6392905 ~ 6394304 (+) True AMCG00010979
TU129372 lncRNA downstream 6973 6636963 ~ 6637188 (+) True G103541
TU129412 lncRNA downstream 277112 6907102 ~ 6927247 (+) True G103567
TU129446 lncRNA downstream 331996 6961986 ~ 6962191 (+) True G103599
TU129466 lncRNA downstream 441443 7071433 ~ 7103189 (+) False AMCG00010994
TU129549 lncRNA downstream 678615 7308605 ~ 7309609 (+) True G103670
AMCG00010981 mRNA upstream 118526 6493616 ~ 6509962 (+) True AMCG00010981
AMCG00010974 mRNA upstream 216692 6408918 ~ 6411796 (+) True AMCG00010974
AMCG00010979 mRNA upstream 233004 6387036 ~ 6395484 (+) False AMCG00010979
AMCG00010969 mRNA upstream 576821 6035491 ~ 6051667 (+) True AMCG00010969
AMCG00010964 mRNA upstream 640808 5977850 ~ 5987680 (+) True AMCG00010964
AMCG00010986 mRNA downstream 124934 6754924 ~ 6762123 (+) True AMCG00010986
AMCG00010989 mRNA downstream 145574 6775564 ~ 6782856 (+) True AMCG00010989
AMCG00010991 mRNA downstream 241833 6871823 ~ 6881274 (+) True AMCG00010991
AMCG00010990 mRNA downstream 262407 6892397 ~ 6920667 (+) True AMCG00010990
AMCG00010993 mRNA downstream 374093 7004083 ~ 7022923 (+) True AMCG00010993
TU128904 other upstream 1986130 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 2544902 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 3048211 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 3184954 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 3200059 3426499 ~ 3428429 (+) False AMCG00010888
TU129373 other downstream 11993 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 287776 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 1918373 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 2900484 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 4188698 10818688 ~ 10819423 (+) True G104273

Expression Profile