RNA id: TU129373



Basic Information


Item Value
RNA id TU129373
length 646
RNA type TUCP
GC content 0.63
exon number 1
gene id G103542
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6641983 ~ 6642628 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTGGAGACGGAGGTGAACAGCAGCCCAGTGGTGGTCAGCTCCGTCTGGATCTGGATGCCTGGGAGCTGGGTGGTGGTCTTAGCTGCCCGAGGCCGGACAGTGGCGGCCGGGGTGGGGGCCTGGGTTGTGGTTGCTGTCATGGTTGTAGTTGTGGTAGGGGCCAGGGTCGTGGTTGTAGCAGCGGTCGAAGCCGCCGCGGTGGTGGTAGTTGTAGAGGCTGTTTTTCTGCGTGGGGCTGCTGTTGtggtagtagtggtggtggtggcagctgTGGTGGGTTCCACGGTGGGCAGCACTGTAGTGGCTTCCTCGGTGCTGTCCACAGGGATGAACAcatcctccttctcctccaccGTGGAGCTGAAGTCCACGAGGCTGGTGGTGGGAGGCGTTTTCTGGGCTGTGGTGGTGACCGAGCTGGTGGTGGCCATGGGGATGGAGGCGGCTGGGCTGGGTTGTCGGCGGACGGACTCAGTTGCGGGGGCCCTGCTCTCCTTCTCCACTCCTGGCACACTCTGGGTTCCCGTAGGCATCGCAGCTGGGGGCACGGATGGGGCAAGGGAGGTGGCCTGGGTGGTGGACAGGGGTACTGGCACTTCTGTAGTGAATGTCAGCTTGGTCCTGGTCTTGAAGTCTATGTCTGGG

Function


GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0007599 hemostasis biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129372 lncRNA upstream 4795 6636963 ~ 6637188 (+) True G103541
TU129371 lncRNA upstream 11993 6628488 ~ 6629990 (+) True G103540
TU129369 lncRNA upstream 14545 6623485 ~ 6627438 (+) True G103538
TU129329 lncRNA upstream 128165 6513312 ~ 6513818 (+) True G103501
TU129286 lncRNA upstream 237680 6400638 ~ 6404303 (+) False G103470
TU129412 lncRNA downstream 264474 6907102 ~ 6927247 (+) True G103567
TU129446 lncRNA downstream 319358 6961986 ~ 6962191 (+) True G103599
TU129466 lncRNA downstream 428805 7071433 ~ 7103189 (+) False AMCG00010994
TU129549 lncRNA downstream 665977 7308605 ~ 7309609 (+) True G103670
TU129564 lncRNA downstream 731047 7373675 ~ 7384727 (+) True G103684
AMCG00010981 mRNA upstream 132021 6493616 ~ 6509962 (+) True AMCG00010981
AMCG00010974 mRNA upstream 230187 6408918 ~ 6411796 (+) True AMCG00010974
AMCG00010979 mRNA upstream 246499 6387036 ~ 6395484 (+) False AMCG00010979
AMCG00010969 mRNA upstream 590316 6035491 ~ 6051667 (+) True AMCG00010969
AMCG00010964 mRNA upstream 654303 5977850 ~ 5987680 (+) True AMCG00010964
AMCG00010986 mRNA downstream 112296 6754924 ~ 6762123 (+) True AMCG00010986
AMCG00010989 mRNA downstream 132936 6775564 ~ 6782856 (+) True AMCG00010989
AMCG00010991 mRNA downstream 229195 6871823 ~ 6881274 (+) True AMCG00010991
AMCG00010990 mRNA downstream 249769 6892397 ~ 6920667 (+) True AMCG00010990
AMCG00010993 mRNA downstream 361455 7004083 ~ 7022923 (+) True AMCG00010993
TU128904 other upstream 1999625 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 2558397 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 3061706 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 3198449 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 3213554 3426499 ~ 3428429 (+) False AMCG00010888
TU129402 other downstream 275138 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 1905735 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 2887846 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 4176060 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 5023570 11666198 ~ 11671340 (+) True G104382

Expression Profile