RNA id: TU133254


Basic Information

Item Value
RNA id TU133254
length 2108
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G106513
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22692737 ~ 22694844 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATCATCTTTTGACTAgtaattttaaaagacaaaacaacaaaaatgtgaacaaCGTATTTAAATAGCAGTGTATACACTTTTGATGTACTGATAGAAACTATGTTGAAACTCCATTcgtaatattttttgtgttgggTGCAGAAAGGCTGCTGGTTACTGTGTTGCTGAAGACTAGGGTGGTCTAACAGACCAAGGGGTGAATGCAAACTGAATACAGGTATTCAaccaatattaataatatttttaaaatgccagtcTCATCttcttgtatttttgttgatTGTACgaaatttgtttaaaagaaacagaaaaatgtacttCCTCAATTCAACATTCAATCACATTGTGTGGgtatttaatttcatgtgtATTTCAATACACAGTTGCAGTCAGCAATTTATTGatggaaactaaataaaattatcTTCACATTCACATTGCTCTCAAatggaaacatgtttttgtattgcacttGAACATCACTCTCCTGAATGGGATTTGATTACAGACACACCCAGCAGCACCCAGAAATCTGTAAGTAGACCATGTTGGGTTGGTGCTGGTGCTAGTAGGAGTAAATTTCAAGATGGCTGTCCTTTCCAAAACCAAGCAAGAAATGCCAGGTGACTGTTGACTtctgagtgttttattttttgtgtcttttatttgCTCATCCCAGGTTCATTCTTCCCTTCTACATTCTGTAACTCTGCTATAGTTCAATggttcaatttgttttccagaaatgGTTAAActgattactgtattttaaagagaagtgcattgtgggaataCTGACACAATTACAAACTGGGACCTGGAGTGAAATGAATCCCACAGCCCaagtgtattaatttaaaaactctACAACTGTAAAACATGCCATGATGCAACAAAAAATGTTGCTAAATAAGCATGATGACTTGCCCTAGATCAGTTATGGTAATCTGCATTTACGTTGATTTCCTGTAATGCTTACAAACTTTTTagtgcaacatttatttttataaacaaattttCTAAAAACACATATTATTCTTGATTTTTTCAACAAGTGATTTAgcttttctgtgtatttaaagtgaatgctttacatttacattttaaatactctgAAGCCTATTGACACTGACCGTCAATACCAACTTCAATACTAACATATGTATTGACATGCTTGagttatatatattacactcaTTACATACCAtgaggacatttaaaaaaaaaaagcatacaatGTCTTAGAGGAACTGAGTATAGCCACTGGCAACAGTGGAACATACAGAGTGTGCAACTATTATTTAGTAATTCATAAAAGATTGCTACAACTATAAAGATTGAGagcttttgtttaaatttgactGTCCAAACCATGTACTTTCCTGATGAGTTTCATAACTACTAAGCTTTTAGACTCAATTCTTCAGACTTAGTCTTGTATGACACGCTCTGCTCTGTTCTTTCTGATCCCTGGAGGCTTCCTCGAGCTGTAACCCTACGCAGTGCCTCCCTCACTTTGACTCTGAAGTCATCTGACACGTACAAGTACAGGAAAGGGTCGATGCTGCTGTTGAAAGTGCTGAGCACTAGGCTGACCATGTAGGGCCGGTACAGGCGACTGTCCTGGAGGACTTGATCTCTGTTGTAATGGAGCAGCAGAATGACATGACTGGGAATGTAGCACACCATGAAAACAGTCAGTACTATAGCACAGATCTTCACAGTTCGGGCAAAAGGCTTCTCCTGTCGAGACAGTGAGCATATTATGGACACATAGCAGATTAAGATGGAGAGGAAAGGGAGGATGAATCCAAAAGCAGTCAGAGATGTGAAGTAGTAGGCAAAGAGGTTAGTCTTCAGATCAGCTGGTAGAGCATCATGGCAGGTGATCATGCTGGTGTTGTTGATGTGGTAAGACTGTTTTATTGCAACAAACGGCACCATTGCAGCGACTGCGATCGCCCAGGTCATGATGCTAACTGAGATGGCCAGCTTTTTGCTCCTGAAACTCTTTGCCGAAAAGGGGTGGACCAGTGAGATGTAGCGGTCAATACTGATGAACATGAGGCAGAGGATGGAGCCATACATGTTGCCGTAGAAGGCNN

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133223 lncRNA upstream 125476 22564099 ~ 22567261 (+) True G106485
TU133219 lncRNA upstream 138247 22554259 ~ 22554490 (+) True G106481
TU133217 lncRNA upstream 145330 22547164 ~ 22547407 (+) True G106479
TU133215 lncRNA upstream 148302 22544184 ~ 22544435 (+) True G106477
TU133216 lncRNA upstream 148665 22543279 ~ 22544072 (+) True G106478
TU133347 lncRNA downstream 167764 22862608 ~ 22862952 (+) True G106586
TU133349 lncRNA downstream 234285 22929129 ~ 22935544 (+) True G106588
TU133371 lncRNA downstream 512402 23207246 ~ 23207477 (+) True G106607
TU133373 lncRNA downstream 658784 23353628 ~ 23355643 (+) True G106609
TU133385 lncRNA downstream 661890 23356734 ~ 23361014 (+) True G106619
AMCG00011396 mRNA upstream 932 22669741 ~ 22691805 (+) True AMCG00011396
AMCG00011397 mRNA upstream 41903 22646032 ~ 22650834 (+) True AMCG00011397
AMCG00011395 mRNA upstream 62140 22604016 ~ 22630597 (+) True AMCG00011395
AMCG00011394 mRNA upstream 89162 22599918 ~ 22603575 (+) True AMCG00011394
AMCG00011392 mRNA upstream 185992 22503972 ~ 22506745 (+) True AMCG00011392
AMCG00011404 mRNA downstream 49677 22744521 ~ 22749846 (+) True AMCG00011404
AMCG00011405 mRNA downstream 57806 22752650 ~ 22785942 (+) True AMCG00011405
AMCG00011406 mRNA downstream 102634 22797478 ~ 22797829 (+) True AMCG00011406
AMCG00011407 mRNA downstream 103194 22798038 ~ 22798793 (+) True AMCG00011407
AMCG00011402 mRNA downstream 124917 22819761 ~ 22834827 (+) True AMCG00011402
TU132939 other upstream 2325514 20361208 ~ 20367223 (+) True G106242
TU132823 other upstream 2353650 20296011 ~ 20339087 (+) False AMCG00011365
TU132810 other upstream 2529771 20095229 ~ 20162966 (+) False G106139
TU133378 other downstream 646464 23341308 ~ 23341765 (+) True G106613
TU133383 other downstream 661218 23356062 ~ 23356559 (+) True G106618
TU133489 other downstream 1053830 23748674 ~ 23753002 (+) True G106711
TU133992 other downstream 3661323 26356167 ~ 26360775 (+) True AMCG00011476
TU134100 other downstream 4075594 26770438 ~ 26771214 (+) True G107202

Expression Profile