RNA id: AMCG00011828


Basic Information

Item Value
RNA id AMCG00011828
length 1432
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00011828
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5696727 ~ 5703921 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccccccccccctattttttttttctttttcttccccctttttcCACCGCCGGGGCCCGACCACGAGGCGCAGCGAGCGACGGGGAGCTCTTGAGGAAGCGGGGGGCCACGGCGAGCGAGAGATGGCGGAGTACGGAAACGGCCTGACGGAGGAGTCGCTGCTGGACTCGGACCCCGGCCACCCGGAGTTGGAGGACTCGGCTGTGGGCGACGAGGAGCCGGggctggaggaaggggaggccGCCATTGAAGACCCGCGAAGCTCCGTCGCAAGCGGCGAGGCTGTGGAGTTGCTGAGGGAGGACAGGCCGCCATTAGCCGCAGCCGCCGCAGTGTCTCGCTGCAGAGGGGCGCGCACGGCCatctctcctgctgctgctgctgccaccgCATCGCCTCCCCGGGCGGCAGACACACCGCTGCGCTGCGACACAGGGTATGACCAACATGTCTCGGTGTTGCAGGAACTGGAGGCGATCAAAGCGCGGGTCCgagagatggaggaggaagcCGAGAAACTGAAGGAACTACAGAACGAGGTGGAGAAACAGATGAACCTCAGTCCCCCTCCAGCGGGTCCCGTCATCATGTCAATAGAGGAGAAGATGGAAGCAGATGGACGCTCGATTTATGTTGGAAATGTGGATTACGGTGCTACTGCTGAGGAACTAGAGGCCCATTTCCATGGCTGTGGCTCGGTCAACAGAGTCACCATCCTGTGCGACAAGTTCACCGGACATCCCAAAGGGTTTGCCTACATCGAGTTTGCAGACAAGGAGTCTGTGCGAACAGCCATGGCCCTGGATGAGTCCCTGTTCAGAGGGAGACAGATCAAGGTGGGAGCAAAGCGGACAAACCGGCCGGGCATCAGCACCACGGACCGTGGATTCCCACGAGCCCGCTTCCGCTCGCGAGGGAACTTCTCCACGTCGCGCTCCCGCTACTACAGCGGATACACCCCCCCCAGAGGCAGAGGACGAGCATTCAGGTTTCAGGACCAGTGGAGGCTGACAACCCCTCCGCCTCCTGTGGCTGCGGCGCCTCCCACAGTGTCGGcagcgtctctctctctctctgctcccgCTATCCACACTCACCCCATCCTCTCTGtttggggaggtgggggagggggtcagGGTGACCACCGGGCCGCCCCAGGGGGCCTGTACTATAACAACAAGCGCTGAGCTCCACTtcaaacacgcacacacgcacccagacacgcacgcacgcacgcacacacacatatatttatatatatatagagagcaAGCCAGATagcagctgctgttttaatacgagagagagacaggcagagagaggggtCAGGGCAGAGCCACGGCCTTGCGCTCAGCTCACACTGGAAACAGTGGGCTCTGAGGGGCGAGCGGGCTGGCTGAGAGCAGTATTTAaatgggtgtggggggggggg

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14396 PABPN1, PABP2; polyadenylate-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166754 lncRNA upstream 13919 5682073 ~ 5682808 (+) True G132997
TU166749 lncRNA upstream 15329 5680468 ~ 5681398 (+) True G132993
TU166554 lncRNA upstream 576883 5115107 ~ 5119844 (+) False AMCG00011806
TU166526 lncRNA upstream 630266 5040958 ~ 5066461 (+) True G132820
TU166528 lncRNA upstream 673906 5021199 ~ 5022821 (+) False G132820
TU166786 lncRNA downstream 68142 5772063 ~ 5799356 (+) True G133014
TU166859 lncRNA downstream 129894 5833815 ~ 5834041 (+) True G133060
TU166865 lncRNA downstream 140343 5844264 ~ 5845059 (+) True G133066
TU166873 lncRNA downstream 147953 5851874 ~ 5852725 (+) True G133074
TU166876 lncRNA downstream 150567 5854488 ~ 5854709 (+) True G133077
AMCG00011826 mRNA upstream 67913 5623410 ~ 5628814 (+) True AMCG00011826
AMCG00011824 mRNA upstream 73366 5570374 ~ 5623361 (+) True AMCG00011824
AMCG00011823 mRNA upstream 128513 5547690 ~ 5568214 (+) True AMCG00011823
AMCG00011820 mRNA upstream 174363 5483510 ~ 5522364 (+) True AMCG00011820
AMCG00011817 mRNA upstream 219968 5472239 ~ 5476759 (+) True AMCG00011817
AMCG00011829 mRNA downstream 11420 5715341 ~ 5716146 (+) True AMCG00011829
AMCG00011830 mRNA downstream 55959 5759880 ~ 5760867 (+) False AMCG00011830
AMCG00011838 mRNA downstream 85048 5788969 ~ 5792277 (+) True AMCG00011838
AMCG00011839 mRNA downstream 114291 5818212 ~ 5824866 (+) True AMCG00011839
AMCG00011835 mRNA downstream 131689 5835610 ~ 5842813 (+) True AMCG00011835
TU166232 other upstream 1753365 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 1758335 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 1800548 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 2492130 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 2692065 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 55937 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 124880 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 183084 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 183084 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 552029 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00046188 False 1737 mRNA 0.52 7 NC_007135.7 14559328 ~ 14577544 (-)
grasscarp (Ctenopharyngodon idella) CI01000018_00985130_00987510.mRNA True 752 mRNA 0.51 5 CI01000018 984992 ~ 987689 (-)