Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00011839 |
| length | 1110 |
| RNA type | mRNA |
| GC content | 0.61 |
| exon number | 10 |
| gene id | AMCG00011839 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030138.1 |
| NCBI id | CM030138.1 |
| chromosome length | 24262032 |
| location | 5818212 ~ 5824866 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0090305 | nucleic acid phosphodiester bond hydrolysis | biological_process |
| GO:0006260 | DNA replication | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0004519 | endonuclease activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004527 | exonuclease activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| K04799 | FEN1, RAD2; flap endonuclease-1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU166786 | lncRNA | upstream | 18856 | 5772063 ~ 5799356 (+) | True | G133014 |
| TU166754 | lncRNA | upstream | 135404 | 5682073 ~ 5682808 (+) | True | G132997 |
| TU166749 | lncRNA | upstream | 136814 | 5680468 ~ 5681398 (+) | True | G132993 |
| TU166554 | lncRNA | upstream | 698368 | 5115107 ~ 5119844 (+) | False | AMCG00011806 |
| TU166526 | lncRNA | upstream | 751751 | 5040958 ~ 5066461 (+) | True | G132820 |
| TU166859 | lncRNA | downstream | 8949 | 5833815 ~ 5834041 (+) | True | G133060 |
| TU166865 | lncRNA | downstream | 19398 | 5844264 ~ 5845059 (+) | True | G133066 |
| TU166873 | lncRNA | downstream | 27008 | 5851874 ~ 5852725 (+) | True | G133074 |
| TU166876 | lncRNA | downstream | 29622 | 5854488 ~ 5854709 (+) | True | G133077 |
| TU166889 | lncRNA | downstream | 45079 | 5869945 ~ 5870156 (+) | True | G133090 |
| AMCG00011838 | mRNA | upstream | 25935 | 5788969 ~ 5792277 (+) | True | AMCG00011838 |
| AMCG00011830 | mRNA | upstream | 57345 | 5759880 ~ 5760867 (+) | False | AMCG00011830 |
| AMCG00011829 | mRNA | upstream | 102066 | 5715341 ~ 5716146 (+) | True | AMCG00011829 |
| AMCG00011828 | mRNA | upstream | 114291 | 5696727 ~ 5703921 (+) | True | AMCG00011828 |
| AMCG00011826 | mRNA | upstream | 189398 | 5623410 ~ 5628814 (+) | True | AMCG00011826 |
| AMCG00011835 | mRNA | downstream | 10744 | 5835610 ~ 5842813 (+) | True | AMCG00011835 |
| AMCG00011836 | mRNA | downstream | 21276 | 5846142 ~ 5850008 (+) | True | AMCG00011836 |
| AMCG00011834 | mRNA | downstream | 47103 | 5871969 ~ 5883438 (+) | True | AMCG00011834 |
| AMCG00011837 | mRNA | downstream | 62051 | 5886917 ~ 5888884 (+) | True | AMCG00011837 |
| AMCG00011853 | mRNA | downstream | 68658 | 5893524 ~ 5907174 (+) | True | AMCG00011853 |
| TU166792 | other | upstream | 56964 | 5759858 ~ 5761248 (+) | True | AMCG00011830 |
| TU166232 | other | upstream | 1874850 | 3941933 ~ 3943362 (+) | False | AMCG00011771 |
| TU166218 | other | upstream | 1879820 | 3903675 ~ 3938392 (+) | False | AMCG00011771 |
| TU166214 | other | upstream | 1922033 | 3892381 ~ 3896179 (+) | False | AMCG00011770 |
| TU165868 | other | upstream | 2613615 | 3201374 ~ 3204597 (+) | True | G132271 |
| TU166858 | other | downstream | 3935 | 5828801 ~ 5829532 (+) | True | G133059 |
| TU166896 | other | downstream | 62139 | 5887005 ~ 5887892 (+) | False | AMCG00011837 |
| TU166897 | other | downstream | 62139 | 5887005 ~ 5887892 (+) | False | AMCG00011837 |
| TU167105 | other | downstream | 431084 | 6255950 ~ 6256682 (+) | False | AMCG00011876 |
| TU167207 | other | downstream | 659081 | 6483947 ~ 6489208 (+) | True | G133327 |
