RNA id: AMCG00011835


Basic Information

Item Value
RNA id AMCG00011835
length 2253
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00011835
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5835610 ~ 5842813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccagtGTGATAGGCAGGGGTCAGAGTCGACAAAAACAATGGCACCTTTGGCCTTTGAACTCCAGAATCAGAATGTCATTATCTGGCAGGAAAAAAGAGGAGCTAGCAAtttataacaaaacaagaagCATGGATGTGGAGAGgggcagagaaagagaaagagcaCAAGGAGGCCTGATTGTTGAACGTTTAAAATTGATTATatacttttctgtgtgtgtctgtgtgtatgatTCTGTGTGTctctacgtgtgtgtgtgtgagtgtgtatctctgtgagtgtgtgtttgtgcaagAATGCGAACAGTAGGTGTGAGTGAGTAAGTGCATAGGCAgactggccatcgggcaattcCAGAAGGGCTGGTCAATTTTTTAGTTTGGTGGACTGGTTGATTCTTGTGTGTGCCAGCCTCTACCCCCTTCCTGCTCTCCTCAGTGAGGGTTAAAGTCCAGGGACaatttttggtcccagtccgcccctgagtttgtgtctctgtgcgtgcctgtgtgtgtgagactgattgtgtctctgtgtgtccttgtgtgtgtgagagagactgattgtgtctctgtgagttcctgtgtgtgcctgtggctgtctgtgtgtctctctgtactTCCACTTACTGTACAGACTGAAATGACAACGTCATACTCCCATAACCTCAGATACCCActgcaacaacaataaaaataatcacaagatttatttaaacgtgatttatgtaaatatatttactgctaccttattaaatatgtaaattggtgttaaataatatgcagaataaaaagaaagaaatacctgCACACTTACTACagctccaaaaaataaaaaatatttatttagcccGTGCTTCACATGTTTTTATGACAACATTTCCATCTACCAGAGATCATCAGGATATAGAAATAATAAGCAGCCCACATATGCTGAATGTTAACGTGTCCTTCCTGCAGTTTCTGGCTGTGACACTCAGTCAGTGGACTCTGTTCAGGGTTTATATCAGGGCAGTATATCGGGGACCGCTAGAGGGCGCCCCGTCTCCAGCTGGAGCTCGCCGCTGTCGGGGGCAGTTTTAATCAGCCCCGGGGAGGGACTGAGTGGGCTATTgagaacagtacagtacagtacagtacaggaaaCGGGTTGGGGATGAATACGGGTGTGTCACAACAAAATGAGCAGTAGCACTAGTTAGAAACTTCTCTGTTCTCCATTGTTCCGTAACACACTACAATCACAACACTCTTAGCGAGGTGCTTGCTGGGAGTTGTAGTTCTTTCGACCCGCTCCACCGCGGCCGGCCCTGCCTCGGAGACTACAGCTCCCGGCAGGCTGTGCGGCGCTAGGGGGCGGGGAGCCGCCAGCACCGGGGAGATTCCCCATAACTCCGGCCGTTTCACACTGTGActgcttttaattttactttcaaTTTCGCTTTTGCACCGAGAGGAAGAAAGCAGGCCCCGACATCTCGCTCCCCGCATCCCTGCGCCCCGCCTCGCACACCGCAGCGCAGCCGACCCCTGCAAGGGACCCGCAGACAGACAGGCTCAGTCGTGACAGCAgcgacacagacagagacagagccgGCATAAGTTGTGACAAAGTCCCTTCGACAGGCGCGACGATGACTACGCTGGAAATGAGACCCGAGGCCAAGAAACAGgtggACGCCTTCTGCAAACAGCTCAGCAAAGAGGCGGAGACCCTCGTTGCCTCTTTCTTCCCTCAGAAGATCGCAGAGATGGAGGAACTGCTAcaggtacagagagagagaggggacagaggGATAGGGATGGATGGAGAGGGATGGAGGAATAGGGATGGAGAGGGCCCGCCCTGCGGCCCGGTGAGCTGCAATGCCAAAGTGGAGTCCCTGCTGAAAAGAGTGAAGCCAGAGATTCAGACGCTGAAGGAGAAGCTCAACACGgtatcTATGTGGGTGCAGCTCCAGATCCCCAAGATTGAGGATGGCAACAACTTTGGTGTCGCTGtgcaggagAAGGTGTTTGAGCTGATGACTGGCACTCGCACAAAGATCGAGGCGTTCCAGACACAGATAAACAAgtaTTTCAGTGAGAGAGGAGACGCCGTCGCCAAGGCCTCCAAACAGACGCatgtgGGGGACTACAGGCAGCTGGTGCATGAGCTGGACCAGAACCAGTACTGCGAGATCCGCATCATGGTGCTGGAGATCAGGAACACCTACTGTGATGATGATGCTGTATTCCGTCATGCGCTGTGA

Function

GO: NA

KEGG:

id description
K06696 PSME1; proteasome activator subunit 1 (PA28 alpha)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166859 lncRNA upstream 1569 5833815 ~ 5834041 (+) True G133060
TU166786 lncRNA upstream 36254 5772063 ~ 5799356 (+) True G133014
TU166754 lncRNA upstream 152802 5682073 ~ 5682808 (+) True G132997
TU166749 lncRNA upstream 154212 5680468 ~ 5681398 (+) True G132993
TU166554 lncRNA upstream 715766 5115107 ~ 5119844 (+) False AMCG00011806
TU166865 lncRNA downstream 1451 5844264 ~ 5845059 (+) True G133066
TU166873 lncRNA downstream 9061 5851874 ~ 5852725 (+) True G133074
TU166876 lncRNA downstream 11675 5854488 ~ 5854709 (+) True G133077
TU166889 lncRNA downstream 27132 5869945 ~ 5870156 (+) True G133090
TU166898 lncRNA downstream 44192 5887005 ~ 5888723 (+) False AMCG00011837
AMCG00011839 mRNA upstream 10744 5818212 ~ 5824866 (+) True AMCG00011839
AMCG00011838 mRNA upstream 43333 5788969 ~ 5792277 (+) True AMCG00011838
AMCG00011830 mRNA upstream 74743 5759880 ~ 5760867 (+) False AMCG00011830
AMCG00011829 mRNA upstream 119464 5715341 ~ 5716146 (+) True AMCG00011829
AMCG00011828 mRNA upstream 131689 5696727 ~ 5703921 (+) True AMCG00011828
AMCG00011836 mRNA downstream 3329 5846142 ~ 5850008 (+) True AMCG00011836
AMCG00011834 mRNA downstream 29156 5871969 ~ 5883438 (+) True AMCG00011834
AMCG00011837 mRNA downstream 44104 5886917 ~ 5888884 (+) True AMCG00011837
AMCG00011853 mRNA downstream 50711 5893524 ~ 5907174 (+) True AMCG00011853
AMCG00011855 mRNA downstream 67668 5910481 ~ 5911354 (+) True AMCG00011855
TU166858 other upstream 6078 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 74362 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 1892248 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 1897218 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 1939431 3892381 ~ 3896179 (+) False AMCG00011770
TU166896 other downstream 44192 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 44192 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 413137 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 641134 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 702575 6545388 ~ 6558485 (+) False AMCG00011909

Expression Profile