RNA id: AMCG00011855


Basic Information

Item Value
RNA id AMCG00011855
length 366
RNA type mRNA
GC content 0.70
exon number 2
gene id AMCG00011855
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5910481 ~ 5911354 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtCTCAGCCAATCAGCGGCGTGCAGAAGGACAGCCCGGAGTACCGCCTGCGTCGGCTGCGCAACAACGTGGCCGTGCGCAGGAGCCGGGACCGGGCCAAGCGGCGGGCACAGCTGACACAGCAGCGGGCGCAGCAGCTGCAGTGCGAGAACGAGCACCTGCGCGCGCTGGGCATCCGGCTGACCCGTGAGCTGCACGCGCTCAGACAGCTTCTCACGCGGCGCCCCCTGCAGCCCGCCACCGGCACCGCGGGGCCCTGGACGCATGAGGGTGAGGGCCAGGCCCGGGCAGAAGGGCAGGCAGACGCAGTCACGCAGTGCGCATACGCAGATGTAGGGCCGGGCGGTGTCATGCAGGAGTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166908 lncRNA upstream 3495 5906038 ~ 5906986 (+) False AMCG00011853
TU166910 lncRNA upstream 7678 5901703 ~ 5902803 (+) True G133108
TU166898 lncRNA upstream 21758 5887005 ~ 5888723 (+) False AMCG00011837
TU166899 lncRNA upstream 22589 5887005 ~ 5887892 (+) False AMCG00011837
TU166889 lncRNA upstream 40325 5869945 ~ 5870156 (+) True G133090
TU166918 lncRNA downstream 21468 5932822 ~ 6007588 (+) True G133115
TU166935 lncRNA downstream 80963 5992317 ~ 6035986 (+) True G133129
TU166938 lncRNA downstream 87255 5998609 ~ 5999231 (+) True G133132
TU166957 lncRNA downstream 156220 6067574 ~ 6077385 (+) True G133145
TU167040 lncRNA downstream 173498 6084852 ~ 6101019 (+) False AMCG00011873
AMCG00011853 mRNA upstream 3307 5893524 ~ 5907174 (+) True AMCG00011853
AMCG00011837 mRNA upstream 21597 5886917 ~ 5888884 (+) True AMCG00011837
AMCG00011834 mRNA upstream 27043 5871969 ~ 5883438 (+) True AMCG00011834
AMCG00011836 mRNA upstream 60473 5846142 ~ 5850008 (+) True AMCG00011836
AMCG00011835 mRNA upstream 67668 5835610 ~ 5842813 (+) True AMCG00011835
AMCG00011852 mRNA downstream 13553 5924907 ~ 5936489 (+) True AMCG00011852
AMCG00011851 mRNA downstream 40358 5951712 ~ 5973380 (+) True AMCG00011851
AMCG00011854 mRNA downstream 62743 5974097 ~ 5980285 (+) True AMCG00011854
AMCG00011850 mRNA downstream 70266 5981620 ~ 5982817 (+) True AMCG00011850
AMCG00011862 mRNA downstream 76423 5987777 ~ 5995655 (+) True AMCG00011862
TU166896 other upstream 22589 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 22589 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 80949 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 149233 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 1967119 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 344596 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 572593 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 634034 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1325587 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1593728 7505082 ~ 7508751 (+) True G133667

Expression Profile