RNA id: AMCG00011851


Basic Information

Item Value
RNA id AMCG00011851
length 4053
RNA type mRNA
GC content 0.59
exon number 27
gene id AMCG00011851
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5951712 ~ 5973380 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtagtgcagtgtgtcactgtgtgtgtgtttctcgtGTTTCAGGAAAAGATCCTGGAGAGAATCACTGCCATCAAGACCAAAGTGGAGGGATTCCAGACCAGCCTGGCCAAGTAACTGACCCTCTGACACACTTGACTCCATGACCGTCTGACACCGAGACTCAGTGACGCTCATCATCATtacaattgttgttgttgGTATTACTCAGAGAGAGGGGACGCTGTGGCCAAAGCTTCTAAAGAGACTCATGTGGTAAGACtggttatgtgtgtgtgagtgtccaCTCTgtcctttgtttgtgtgtctgccaACATCGTTCTGTTAATAGCCCATCTCCCCCACCATTGACCTCTTCCCCTCTGCCTGACAGATGGACTACCGCTCTCTGGTGCACGAGCGAGATGAGGCCCTGTACTCTGAGCTCAGAGTCACCCTGCTGGACATCCGCGGCTTCTACGTGAgtcagaggggtggggggtggtcagtcagtgtgtctctcagccagccagtcagtcagtgcgttAGTGAGTGCgttagtcagtgtgttagtcagtgtgtctatcagtgtgtctgtcagtgtgtctgtcagtcagtcagtgtgtctgtgtgttcgtgtgtctgtcagtcagtcagtgtgtctgtcagtcagtctgtcagtgtgtcagtcagtctgtcagtgtgttcgtgtgtctgtcagtcacagtATGCATGTCTCCTTCAGCTCCCTGACTTCAGGCTTTACTCTGTCCAGCAGGGTGGTGATCTTCTCATTGGCCTTAATAAACCCACATGGagggggtttcttcttctttttctcattCTCGTCCTCCTTGTCCGTCTCCATCACCTCGTCCTCTGGCTTGGGCGGGTCGGGGATGGGGATGTCCAGCGGGGCGTGGAGAGAGGACAGGTCACCCACGTTCATCACAtcatcCTTCAGCAGGTTGTCCAGTTGGATGATCTTCAGGGGGATCCGCTCCGAGAACAGCTGGTCTGCCTGTTGAAACAGCGACACCCTGAAGGTCTCCACCTGCAGAAACTGTGTTTCCGGGTGGTAGCCGGAGATcgaccctctctctcccccggTTCTCTCCTCAGGGGTactgagagaggaagaggaagacgaATAGAGGACGAAGGACGAGAGAAGACAGGGATGAAAATGCCCTCAGATCTGGACCGCCTGGAGGAGCTGAGGGCCAGGGCCGAGACGTTGCTGGCGTCCGGCTCCGCCCAGGAGGTGCGCCCGGCCGTGGAGGAAATGGCCTCCCTGCACCTCCCCCTGTCGGACAAATACCGGCACATCGCCGCCGAGGCCATGGTCAGGGAGAACGGAGGCGGGGCTTCTGACACCGAGtctatGTCATCTCTGCAGAAGCTCTCGACCGCTCTTAACATCTTGGAGAAGTACGGCTGTAACCTGGTGTCCCCGGGCCGGCCGCGGTACTGGAGGACCGTCAAGCACAACAACCCGGTGTTCAGAGCCACGGTGGACTCCAtcactgGGGGGCGCGCCGTGCTGTGTCTCTACGGCTACTCCAATCAGCAGTCGGACGGGCTCAGCTTCCCCGAAGACGTGAAGGAGCCCGACACCCTGAAGGTGGCCGCGGTGACGCTGGAGGTCATGACCCTGCGACTGGAGCTGGACATACTCATCAAGGCTCCCGTGGTTGCCAGCCCGGACTCTGTACTGGCTGGGGGGGCAGCTGGGAACATGGTAACAGAGACGGACTCCATCCCGCTACAGTACCCCCTGACTATTGGCCCCGCCCCCATAATGTCCCCCACCCACGTCCCCGCCCAGTCGCTCCGAGCCACGCCCCCTTCACTGCCCCCCAACTCTCACACAGTAGGGGAGTGCAGTGTCTGTGGTAACACCCCGACTCTCTCCTGCCCTCCCTGTGGCTCCACCCTGTTCTGCGAGACATGTGACCTCGTGTTCCACCGCCACCCAGGGAGAGCCAATCACAACAGAGAACCCCTCCGCAATGTGCCTGACTGTGACCGACTGTACCACAGTCACCCGGCCAGGGGGGGACACCGGCGCAGCTCTGTGGCATCTCCCAGCCCCCGGAGGCTCCAGAGctgcagTGTGAACGAAGGCGTGGCCGCTCTGTGCTTGTGCTGTGAGCGACCTCGCGCCGCGCCACCCCCTGCTGCCCGGGAGGACACACTGCCACCTGTCACTCTCTCTTGCCAGACCAACCACGCCCCCGCGCCTTCCCAGTATCCCGTCACCCCGGCGACCAAGGAGCCCCCGGCTCCCATCACGCCCTCGAAGCCAGCAGCCCCGCCCATCCCCACGCCCAGGAAGAATGCTGACTGGCTGAGGCAGAGCCGGATGAAGGAGGATGGGCTGAAGCTCATCAGGATGATCCGAGAGGGGGAGAGCCGGGGCTTCAGTCCCGAGGAGGTGTGGGCGGCGGCCAATTGCTCGGAGAGCAGTGAgccctgtgattggctgagggtgcgGGAGCTGCAGGCAGTGGGCatgtggggggggcagtgtgcCGAGGCCTTGCGGCGCAGCGGGGGCTCTGTGCGGGAGGCGCTCTGTGAGCTGCAgcgccccctgctggagcccttCCATCAGCGCCTGTGGAGCCAGGACTGCGAGCCAGCCATCGATGTCAAGCACACGGACAAAcagCGGGTGCTGCGCAGATTGCTGGCTGTGTTCGAGCTGCCCAGCTGGGGGCGCTGTGAGCTGGCCCTGTCGTTGCTGCAGGAGCCCGGCGCCCCCTACGGGCTGGAGGACGTGGTGCAGGCCGTGCGTGAGTCACATGACCGGGATCTCATCCACCGGCTGCTGGCCAAGGAATGTCCCATCTGCATCACTCCATACCCCCAGAGCAagATGCGGGCTCTGACCTCGTGTCAGTGCAGCGTGTGCTCCAGCTGTTTTCAGCAATACTTCACCATCACCGTGAGGGACAGACACATCAGGGAAAtggtgtgtccagtgtgtggaCTGCCCGACATCAACGAGCAAGCCCAGCTCAACAGCTACTTCTCCACGCTGGACATCCAGTTGCGTGACTGTCTGGAGCCCGAGGTGTACCAGCTGTTCCACCAGAAGCTGACGGAGCAGGCGCTCATACAGGATCCCAAATTCCTCTGGTGTACACACtgCTCGTTCGGGTTTATCTATGATGGAGACCAGCTGAAGGTGACCTGTCTTCAGTGCAGGAAGAGCTTCTGTGCCAAGTGCAGGAAACCtTACGCTCTGTCCAAGGGGGGCTGCATGCACTTCACCTGCTCCCAGTGTCGCCACCAGTTCTGCAGCGGCTGCAACAACCCCTTTCACACTTGCTCAGTGCAGCAGTGTTCAGTGACGGGGTTACACGCCCACCACCCCAGGGACTGTTTCTTCTACTTGCGGGACTGGGACCCCACCAGACTGCAGATCCTGCTGCAGTGTGGCGTGATGGAGCAGAAGGAGGAGGGGGCGAGGCTGCTGGACGCCCCGTGTGGAGCTCAGAGTCAGAGGGGTCAGGCAGGGCTGTGCGAgaagcactaCAGGGAGTACCTGGTCAGCCTGATCAACGGCCACGCGCTGGACCCTGCCCCCCTGTACGACACGCAGGAGCTGCTCGTGGCCTGCGGGAGGTACCACCTGGATCACGCGCGGGGGGAGGCGGAGGACGACGCGGCGTACCACAACAGACTGctgaggaAGCTGATGACGGAGGTTCCTCTGGGTGACACGGTCCCTCGGAAGAAGTGAACGAAACAAAAGGATGAGAATCtcaattaaacaacaaaacagcctcAACCactacaacaatacaaataataacgatgatgatgatgatgatgaatactTCAGTAATGACATtgactctccctctctcacacacacacacacactctcacagacactctaacacacacacacacattcacacgtGTTGTTTGTGAGAGACTATTGTGTGTTTCTCACCCTGCTTTCTACAGCTCTTGCACCTTggtacccctctctctctttcatctcCGTCTTctgctgaaaatacatttataaattaatcaataaaaaatatatttaagttcA

Function

GO: NA

KEGG:

id description
K11974 RNF31, HOIP; E3 ubiquitin-protein ligase RNF31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166908 lncRNA upstream 44726 5906038 ~ 5906986 (+) False AMCG00011853
TU166910 lncRNA upstream 48909 5901703 ~ 5902803 (+) True G133108
TU166898 lncRNA upstream 62989 5887005 ~ 5888723 (+) False AMCG00011837
TU166899 lncRNA upstream 63820 5887005 ~ 5887892 (+) False AMCG00011837
TU166889 lncRNA upstream 81556 5869945 ~ 5870156 (+) True G133090
TU166935 lncRNA downstream 18937 5992317 ~ 6035986 (+) True G133129
TU166938 lncRNA downstream 25229 5998609 ~ 5999231 (+) True G133132
TU166957 lncRNA downstream 94194 6067574 ~ 6077385 (+) True G133145
TU167040 lncRNA downstream 111472 6084852 ~ 6101019 (+) False AMCG00011873
TU167088 lncRNA downstream 250926 6224306 ~ 6224519 (+) True G133248
AMCG00011852 mRNA upstream 15223 5924907 ~ 5936489 (+) True AMCG00011852
AMCG00011855 mRNA upstream 40358 5910481 ~ 5911354 (+) True AMCG00011855
AMCG00011853 mRNA upstream 44538 5893524 ~ 5907174 (+) True AMCG00011853
AMCG00011837 mRNA upstream 62828 5886917 ~ 5888884 (+) True AMCG00011837
AMCG00011834 mRNA upstream 68274 5871969 ~ 5883438 (+) True AMCG00011834
AMCG00011854 mRNA downstream 717 5974097 ~ 5980285 (+) True AMCG00011854
AMCG00011850 mRNA downstream 8240 5981620 ~ 5982817 (+) True AMCG00011850
AMCG00011862 mRNA downstream 14397 5987777 ~ 5995655 (+) True AMCG00011862
AMCG00011864 mRNA downstream 30297 6003677 ~ 6013110 (+) True AMCG00011864
AMCG00011861 mRNA downstream 44835 6018215 ~ 6021696 (+) True AMCG00011861
TU166896 other upstream 63820 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 63820 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 122180 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 190464 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 2008350 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 282570 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 510567 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 572008 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1263561 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1531702 7505082 ~ 7508751 (+) True G133667

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU34166 True 376 lncRNA 0.31 2 CI01000004 9616647 ~ 9617267 (+)
tiger barb (Puntius tetrazona) TU34166 True 4277 lncRNA 0.37 2 NC_056701.1 24615167 ~ 24638416 (+)