RNA id: AMCG00011861


Basic Information

Item Value
RNA id AMCG00011861
length 1498
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00011861
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6018215 ~ 6021696 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagacacacagacagacacacaggtgtGTAGAGGTGTTGCGTGGGGAGGCAGTGAGGTATGCCGGTGCGTTATTGTCACTCTCAGCCCTGCGATGCAAGACGAGACTGACTCGGAgacccATGGCTGGCTGACAGGCTGGCTGCCCTCCTGGCGCCCCACATCCATGTCCCTGCTGAAGAGCACCGAGGCCCGCATCCTGGCCCGTCAGTACCCCGCTGCTCCAGAAcaactgactggactggacctaACCAgtaTTCAGAGTGAACTGAGGACCCGGTTCGTGACTCTCCAGAACCAGGAGAAGATCTGGACCCTGACAAACCTGGATGCGCTGTGCGGCCGCCGGACCATCCATGCTCTGGACCTTCCCGGGTTCGGCCGCTCGTCCCGCCCCCGCTTCCCCTCTGACCCCGAGCTGGCCGAGGACCTGTCCGTCAGTGCCATCGAGGACTGGAGGCGGGCCATGGGGCTGGAGCGCTTTATCCTATTGGGCCACAGCCTGGGCGGCTACCTGGCGACCTCCTATGCTATCCGTCACCCTGACAGGGTGAGTCACTTGATCCTGGTCGACCCCTGGGGTTTCCCCGAGAAACCACAGCCCGGAGGTCAGGGGTCGGTGACCCGGCCAGGGCCCCCCCGCTGGGTCCGAGTGCTGGCCTCCATCGTGTCCCTGTTCAACCCCCTGGCTGTGATCCGAGCGGCCGGGCCCTGGGgtCCAGGGCTGGTTCACAGGTTCAGGCCGGATTTTAAGCAGAAGTTCGAGGGCGTTTTCGATGATGACACCATGACGGAGTATATCTACCACTGCAACGCACAGAGCCCCAGcgggGAGGTGGGGTTCAGGGCGCTGTCGCAGTCCCTGGGCTGGGCGAAGAGGCCCATGCTGCCCCGCGTTCCCCTACTGTCCCCCACACTGCCCGTCTCCCTCATCTATGGCGCCCAGTCCTGGGTGGACAGCCAGACCGGGGACAGAGTGAGAGAGCTGAGGCCACAGAGCTACACACACAtcgagGTGATTGAAGGGGCATCTCACCACGTCTACGCTGACCAGCCTCACGAGTTCAACCAAGTGGTGGAGAAGATCTGTAACAGTGTGGACTGACTCTCTGTACTCTTCTGACTaaccattcatatttatatcCTTCAGCTCTCTCTATATTGGCGCGTccagtctccctctctcactaCGTCAGTCTACCATGCCTGGGTTAGTGCGTCTGTGTGTACGGCCAGCGTCCCTGGGAGTCTGTGCCAGAGTCCGTCTGCGTGCCGACCACTGTCTGTGCAAGTGTCTGTGCGAGTCCGTATGCCGGCCAGCGTCCGTGTGAGGCTGTGACCGCTTGTGCCAGTGTCCGCGTGAGTCTGTGTGCCGGCCAGTGTCCGTGCGAGTCTGTGTACCAGTGAGTGAGCATGTGAGTGTTGGTCATATCCCATGTTCACtgtaaatgcattcattttataaCTTTCATATTAATAAAGATTTATCTTTTCACAAAA

Function

GO: NA

KEGG:

id description
K13698 ABHD4; abhydrolase domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166918 lncRNA upstream 10627 5932822 ~ 6007588 (+) True G133115
TU166938 lncRNA upstream 18984 5998609 ~ 5999231 (+) True G133132
TU166908 lncRNA upstream 111229 5906038 ~ 5906986 (+) False AMCG00011853
TU166910 lncRNA upstream 115412 5901703 ~ 5902803 (+) True G133108
TU166898 lncRNA upstream 129492 5887005 ~ 5888723 (+) False AMCG00011837
TU166957 lncRNA downstream 45878 6067574 ~ 6077385 (+) True G133145
TU167040 lncRNA downstream 63156 6084852 ~ 6101019 (+) False AMCG00011873
TU167088 lncRNA downstream 202610 6224306 ~ 6224519 (+) True G133248
TU167106 lncRNA downstream 236364 6258060 ~ 6260368 (+) False AMCG00011876
TU167109 lncRNA downstream 301070 6322766 ~ 6347706 (+) True G133264
AMCG00011864 mRNA upstream 5105 6003677 ~ 6013110 (+) True AMCG00011864
AMCG00011862 mRNA upstream 22560 5987777 ~ 5995655 (+) True AMCG00011862
AMCG00011850 mRNA upstream 35398 5981620 ~ 5982817 (+) True AMCG00011850
AMCG00011854 mRNA upstream 37930 5974097 ~ 5980285 (+) True AMCG00011854
AMCG00011851 mRNA upstream 44835 5951712 ~ 5973380 (+) True AMCG00011851
AMCG00011863 mRNA downstream 8403 6030099 ~ 6050853 (+) True AMCG00011863
AMCG00011865 mRNA downstream 31878 6053574 ~ 6054005 (+) True AMCG00011865
AMCG00011873 mRNA downstream 79134 6100830 ~ 6102011 (+) True AMCG00011873
AMCG00011872 mRNA downstream 125936 6147632 ~ 6148597 (+) True AMCG00011872
AMCG00011874 mRNA downstream 148373 6170069 ~ 6170866 (+) True AMCG00011874
TU166896 other upstream 130323 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 130323 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 188683 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 256967 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 2074853 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 234254 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 462251 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 523692 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1215245 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1483386 7505082 ~ 7508751 (+) True G133667

Expression Profile