RNA id: AMCG00011863


Basic Information

Item Value
RNA id AMCG00011863
length 1886
RNA type mRNA
GC content 0.57
exon number 21
gene id AMCG00011863
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6030099 ~ 6050853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccctctctctctctctctctctctctctctctctctctctctctcatgatgATGATTGTCGCCAGTAGCGCCAGATCTTGTGCTGGAATGTCTTCAAGAAAAGCGCTACCTtaagggagacacagagacacagagacacacagagagatggcTTCTAAGGACCTGGCGGCAACATCTTTCGCCAGCATAGGCAGAGAAATGTCAGAGACAATCAGGAAGATTATTGATAAGTCGTCAATAAAGTTCATCCGCACGGTCAAACTGGAGACCAGAAACGGCAAGACTGAGGACAGAATACTGgtTCTCACAACATGGCGGCTGTATCTGTTTACTGTGAAGGTGCCAGCAAAGgtGGAGATCACCTTTAACTTCCTGGAGATTCGTTCCATGAACACATGTCCGGACCATCAGGTTGTACTAGAAACCGAGAAGTCCACCTACTCTGTCCGGCTGCAGTCATTGGATCACCTGGACCAGGTGATCAGCCATGTGAATTTCGCCCTCTCCAGAATATTCAACAACTCCATCTTTGCtccctctctctgcagagatgtgGACACTATCTATCACTCTCAGGACAACAGAGAGTTTAACCTGCTGGATTTCAGCCACCTGGAGAGCAGggACCTGGCTgggtcagaggtcacagagCAGGTTCTGCACACACTCAGTAAGTCCAGCAGTCTGGAGGAGGTCACACTGGAGAACGCCGGCCTGAAATCtgactTTCCTCAGAAGTTGTCTCTGGCTCTGTCAGAGAACCCCGCCTCAGTGATCCACTCACTCAACCTGGCGCACAACACGCTGGACAACCAGGGCGTGTCGAACCTCATACAGCAGGTGTGTCGACTGACCAAGGGGCTGCGGCTGCTCAACCTGTCGAAGACATCGCTGACGTCCAAAGgGCTCCTGTCGGTGGCCCAAGCGCTGTGCAGTAATGATGAGTTCTCCTCCTCTTTGCTACACCTGGACCTGAGCAGGAACCCTGGGGTGCTGTCGGGGGAAGAGGCCACGTTCTTCAGCTCGGCGTTCAGCCTCACCCACATCAGCCTGGCCGGCATGAAACTGCCCCCCGAGGCCCTGAGAGCTCTGTTTCTTGGCCTGTCCTCCAACCCTCATGTCAGTGACCTCCACCTGGACATAAGTGGCTGTGAGCTGAAGTCTGCGGGAGCCTCAGTGATTCAGGAGCTGTTCCCACGCGTCTCCTCCATCGGCACTCTGGACATCTCCGACAACGGTCTGGACACGGAGCTCCTGGCAGTGATTCCTGCTCTATCGCACCACCCGTCTCTCAGACACCTCCTGATAGGCAAGAACTTCAACATCAAAAACagGGTGGATCTGAGTGGCAACGGCATGGAGGACCTGGGTGCCAAGATGCTGAGCAAAGCCCTGCAGATCAACACCACACTGAGtaACTTCACGCTGCAGTACATGCCCCTCCCCCTCAGTGATGTCACTCAGGCATACCGCAGCGCCCCTGAGAGGACAGAACAGGCACTGACCAAGATTCAGAGGGCTCTGCTGAGGAACAATCAGACTCAGTGCTTCTCTCAGCGTCAGGCGCTCAGGCTGCACCAGGGCCTGGTCACGAGCACCGCCGAGCAGgtcATGGACcggctgtgtgtgcgtgtacagCAGCAGGTGAGTGTGCTGCGTGGCTGTGCGGCCGAGTCACTCAGAGATGACTTGCAGGGGGCCAGACAGGTGCTGAAGGAGGCCAGGAACTCCAGAGCGgagCTCTGTCCTCAGGCCTCCGCCCTGGCCGAGCGCCTCTCCCCCCCACTCTCCTCCGTCGCCGAGCGCGTCTCCATCCCTCGCTCCGCCATCCGCACTGCCCTGATGGAGAGAGCGGGGCAGGACATCCACCGAGCGCTGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166918 lncRNA upstream 22511 5932822 ~ 6007588 (+) True G133115
TU166938 lncRNA upstream 30868 5998609 ~ 5999231 (+) True G133132
TU166908 lncRNA upstream 123113 5906038 ~ 5906986 (+) False AMCG00011853
TU166910 lncRNA upstream 127296 5901703 ~ 5902803 (+) True G133108
TU166898 lncRNA upstream 141376 5887005 ~ 5888723 (+) False AMCG00011837
TU166957 lncRNA downstream 16721 6067574 ~ 6077385 (+) True G133145
TU167040 lncRNA downstream 33999 6084852 ~ 6101019 (+) False AMCG00011873
TU167088 lncRNA downstream 173453 6224306 ~ 6224519 (+) True G133248
TU167106 lncRNA downstream 207207 6258060 ~ 6260368 (+) False AMCG00011876
TU167109 lncRNA downstream 271913 6322766 ~ 6347706 (+) True G133264
AMCG00011861 mRNA upstream 8403 6018215 ~ 6021696 (+) True AMCG00011861
AMCG00011864 mRNA upstream 16989 6003677 ~ 6013110 (+) True AMCG00011864
AMCG00011862 mRNA upstream 34444 5987777 ~ 5995655 (+) True AMCG00011862
AMCG00011850 mRNA upstream 47282 5981620 ~ 5982817 (+) True AMCG00011850
AMCG00011854 mRNA upstream 49814 5974097 ~ 5980285 (+) True AMCG00011854
AMCG00011865 mRNA downstream 2721 6053574 ~ 6054005 (+) True AMCG00011865
AMCG00011873 mRNA downstream 49977 6100830 ~ 6102011 (+) True AMCG00011873
AMCG00011872 mRNA downstream 96779 6147632 ~ 6148597 (+) True AMCG00011872
AMCG00011874 mRNA downstream 119216 6170069 ~ 6170866 (+) True AMCG00011874
AMCG00011875 mRNA downstream 191137 6241990 ~ 6243488 (+) True AMCG00011875
TU166896 other upstream 142207 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 142207 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 200567 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 268851 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 2086737 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 205097 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 433094 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 494535 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1186088 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1454229 7505082 ~ 7508751 (+) True G133667

Expression Profile