RNA id: AMCG00011862


Basic Information

Item Value
RNA id AMCG00011862
length 1441
RNA type mRNA
GC content 0.58
exon number 12
gene id AMCG00011862
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5987777 ~ 5995655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTTTTCTAGGAAGAGAGAGTCGCGCAGCCCACGGTGAAAGTAATAATATTCAGGATATCAATTCcagtaataattacaataataataataataaccacggGTCTGGACCTGCGTCGCATCAGACACGCACAGGGCTGACCCGCGGAACTGGTTCTCAGCAAGCATGcACGGACGAGTGAAGCTGAAGTCCACCgcgcagcaggaggaggagaagcggaaagagagggagaagaaacTGAGCTCGTCTGAGGACGAGCTGCAGGTGCTGTACGAGGCCGAGCTGTCCTTCCTGGAGGGGTGTCTGCGCGTCAACCCCAAGTCCTATGGCAGCTGGCACCACCGGGGCTGGGACGAGCTCAGTTTCACCGCCCGGCTCATCGGCTCCAATTTCTCCAACTACTCCAGCTGGCACTACCGCAGCACCCTGCTGCCCGCGCTGCACCCGCCACCCGGGCCCCCCGCGCCTCCCGGCCACCTCTCGCCCCCCCGCGCCCGCGTCTGCGAGGAGCAGCTGCTGAAAGAATATGAGCTGGTCCAGAACGCCTTCTTCACCGACCCCAATGACCAGAGCGCCTGGTTCTACTATCGCTGGCTCCTGGGCCGAGCGGAGCGTGAGGAGagtGTGGACTCTATGCGTGTGGCGTACTACAGTGACCTGTGCAGTAAGTTCTTGATTGAGAACACCATCCTGAAGATGGAGTACGCAGAGGCCAGGGTCTTCATTCTgtccggcaagAACCTGACAACTCTGTCTCACCTGGACCAGCTACTATTGGTCACTCACATCAACCTGTCGTCCAATCAGCTGCGAACACTGCCCCCCCATGTCGCCATGCTGCAGTGCCTGGAGgtgttgGAGGTGGAGGATAACCAGATCGACAACGTGGATGGACTGTACCACCTGCCCAGGCTGGAGGAGGTGTGTCTGCGGAACAACCGAATTGGCAAGGTGTCTGACCTCCGACCCCTGGCCACCTGCCCCAAACTGTTCAAGCTCGACCTCCGCGGAAACGCAGTCGCTGAGCTGGCCGAGCTCCAGTCAGAGCTGGCCGAGCTGCTGCCCACAGTGAGGGAGCTCCTGTTCTGATTGGGCGGGAGGGGCACACCACTGCGCACTGCCACTACAgccctgagtgtgtgtgtgtgtgtgtgactgtgcgtctgactgtgtgtgtgtgtgtgactgtgcgtctgactgtgtgtgtgtgtgactgtgcgtctgactgtgtgtgtctgtgtctctgtgtgactgtgcgtttgactgtgtgtgtgtgtgtgactgtgcgtCTGACTGTGCATCTGACTGTGTGTGACTATGcgtttgactgtgtgtgtgactgCCTGGCTCTCTCCGCGTCTACCTGTCTCGTACTGCgattttctctgtgtgtgtgagtgtctgtatGTACCACTGCTTGAAtagatgtgtgtctgtgtct

Function

GO:

id name namespace
GO:0018342 protein prenylation biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004663 Rab geranylgeranyltransferase activity molecular_function

KEGG:

id description
K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166908 lncRNA upstream 80791 5906038 ~ 5906986 (+) False AMCG00011853
TU166910 lncRNA upstream 84974 5901703 ~ 5902803 (+) True G133108
TU166898 lncRNA upstream 99054 5887005 ~ 5888723 (+) False AMCG00011837
TU166899 lncRNA upstream 99885 5887005 ~ 5887892 (+) False AMCG00011837
TU166889 lncRNA upstream 117621 5869945 ~ 5870156 (+) True G133090
TU166938 lncRNA downstream 2954 5998609 ~ 5999231 (+) True G133132
TU166957 lncRNA downstream 71919 6067574 ~ 6077385 (+) True G133145
TU167040 lncRNA downstream 89197 6084852 ~ 6101019 (+) False AMCG00011873
TU167088 lncRNA downstream 228651 6224306 ~ 6224519 (+) True G133248
TU167106 lncRNA downstream 262405 6258060 ~ 6260368 (+) False AMCG00011876
AMCG00011850 mRNA upstream 4960 5981620 ~ 5982817 (+) True AMCG00011850
AMCG00011854 mRNA upstream 7492 5974097 ~ 5980285 (+) True AMCG00011854
AMCG00011851 mRNA upstream 14397 5951712 ~ 5973380 (+) True AMCG00011851
AMCG00011852 mRNA upstream 51288 5924907 ~ 5936489 (+) True AMCG00011852
AMCG00011855 mRNA upstream 76423 5910481 ~ 5911354 (+) True AMCG00011855
AMCG00011864 mRNA downstream 8022 6003677 ~ 6013110 (+) True AMCG00011864
AMCG00011861 mRNA downstream 22560 6018215 ~ 6021696 (+) True AMCG00011861
AMCG00011863 mRNA downstream 34444 6030099 ~ 6050853 (+) True AMCG00011863
AMCG00011865 mRNA downstream 57919 6053574 ~ 6054005 (+) True AMCG00011865
AMCG00011873 mRNA downstream 105175 6100830 ~ 6102011 (+) True AMCG00011873
TU166896 other upstream 99885 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 99885 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 158245 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 226529 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 2044415 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 260295 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 488292 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 549733 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1241286 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1509427 7505082 ~ 7508751 (+) True G133667

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042544 True 881 lncRNA 0.48 6 NC_007134.7 1718993 ~ 1725502 (+)