RNA id: AMCG00011852


Basic Information

Item Value
RNA id AMCG00011852
length 1989
RNA type mRNA
GC content 0.66
exon number 19
gene id AMCG00011852
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5924907 ~ 5936489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGAGGAGCTGGAGAGCGTACTGTCCCAGCTCACCCAGCCCGACAACGCTGTCATCCAGCGGCTCTTCCACAGCAGCCTGCAGGACCTGGGCAACCCCACCGCCCTGTACTACAGCATCCAGAGCCTGACGGCCATCACGGCCCACACCGGCACCGAGCACCTGGTCCAGGCCAGCGAGGCGATGGAGGTGTTTGACGAGATGATGGAGAGCGAGGTGTCCATCGTGGTGCCGCACATCGCGGACATCGTGCGCTTCTGCCTGGAGtcCGTGCTGAAACAGAAGCTGCTGGCACCCATCCTGCAGACGGTGTTCCCGGTACTGAGCGCGGCGCCCCCCGCTGGCCAGGAGGACCCGGAGGACGAGGAGCCAGACAGTGAGGACCCGGGCGAGGGCAGCGAGACGCCCAAGCACTACGCAGCGCAGGTCATCGACACgctggccctgcacctgccccCAGAGAAGCTCTTCAGCCAGCTGaccccTCTGACCCAGGCCGCTCTGCAGAGTGACAGCCCTTATGACAAGAAGGCGGGGCTCATGTGTCTGGCGGTGCTGGCCGAGGGCTGCGCTGACCACATGCGCACCAAgctgCTGTCCTCCGTGCTGCAGGTGGTGTGTCGCGCTCTGGGGGACGAGAGTCAGGTGGTGCGCAGCGCTGCCCTCTTCGCTCTGGGACAGTTCTCTGAGCACCTGCAGccGGACATCAGCAAGTACAGTAGTGATCTGATGCCGCTTTTGCTAGGTTACCTCTCAGGGCTGGACAGCCGGCGCGGGGGTCACCTGTCCAAGGCCTTCTATGCCCTGGAGAACTTCGTGGAAAACCTCGggGAGGAGGTGCAGCCCTACCTGCCCACGCTAATGGAGAGGATGCTGTCGGCACTGAGTGGGGCCGAGAGCCTGCGGGTGAAGGAGCTGGCTGTCAGCGCCATCGCCGCCATCGccaATGCTGCCAAGGAGCTGCTGGTGCCGTACTTCCCCCCAGTGATCGACAGTCTGAAGGGCTTCCTGACGGACATGCGGGAGGAGGCCCGGGCCCTGCAGACACAGGCACTGGacaCGCTGGCAGTGCTGGCGCGGACGGTGGGCAAGGAGGTGTTCAGCCCTCTGGCCCCGGAGTGTGTACAGCTCGGCCTCAACCTCACTGACAGCGTGGACGACCCTGACCTGCGCCGCTGCACgtaCAGTCTGTTCTCTGCTGTGTCCACTGTGTGTCCAGAATctctgcTAAAGCTGCTTGGGGTGACGGTGCCCTGCGTGCTGCAGGCGGTGCGGGAGGAGCGGGAGCGCGAAGTGGTGATGGGGGCGCTGGAGTGCGTGAACGCCATCGCGTGTCAGGACAGTGGAGAGGATGGAGATGATGATGAGCAGCAGGCGGAGTTTGACGGCATGCTGCAGGAGTACGCTGGGGAGGGGATCCCCCTGCTGGCGGCCGCTGTGTCTGCTGACGTCTTCGCCCCCTTCCTGGACGAGCTGCTGCCCCTACTGCTGAGCAAGACTAAGCCCTCCTGCACCGTGGCCGAGCGCTCGTTCTCGCTGGGCACCCTGGCGGAGATGCTGCAGGCTCTGGGGGGCGTGTCCGGGGGCGGAGCGGTGGCGGCCCGGCTGGCGGCCCGTCTGCTGCCGGTGCTGGTGGGGGGGGCCCGGGACAGCGACGCGGAGGTGCGCAGCAACAGCGTGTTCGGGGTGGGGGTGCTGGCCCAGGCCTGTGGTGCCGCGCTCACACAAGACTACCCCGGGATCCTGGCCGTGTTCTCGTCCCTGCTGGCCAGAGAGAGCGACCGCCGCGTCATCGACAACCTGTGCGCCGCGCTGAGCCGCATGATGCTGAGCAACACGGCCTGCGTGCCCCTGGAGCAGGTGTTCCCGGCGGTGCTGTCCTTTCTGCCTCTGAAGGAGGACCTGGAGGAGAACAGTACGGTGTACAGCTGCCTGACATTCCTGTACAGCCAGACGCCCGcactgCGGAGCGGGCGGCCACCCTGA

Function

GO: NA

KEGG:

id description
K20221 IPO4, RANBP4; importin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166908 lncRNA upstream 17921 5906038 ~ 5906986 (+) False AMCG00011853
TU166910 lncRNA upstream 22104 5901703 ~ 5902803 (+) True G133108
TU166898 lncRNA upstream 36184 5887005 ~ 5888723 (+) False AMCG00011837
TU166899 lncRNA upstream 37015 5887005 ~ 5887892 (+) False AMCG00011837
TU166889 lncRNA upstream 54751 5869945 ~ 5870156 (+) True G133090
TU166935 lncRNA downstream 55828 5992317 ~ 6035986 (+) True G133129
TU166938 lncRNA downstream 62120 5998609 ~ 5999231 (+) True G133132
TU166957 lncRNA downstream 131085 6067574 ~ 6077385 (+) True G133145
TU167040 lncRNA downstream 148363 6084852 ~ 6101019 (+) False AMCG00011873
TU167088 lncRNA downstream 287817 6224306 ~ 6224519 (+) True G133248
AMCG00011855 mRNA upstream 13553 5910481 ~ 5911354 (+) True AMCG00011855
AMCG00011853 mRNA upstream 17733 5893524 ~ 5907174 (+) True AMCG00011853
AMCG00011837 mRNA upstream 36023 5886917 ~ 5888884 (+) True AMCG00011837
AMCG00011834 mRNA upstream 41469 5871969 ~ 5883438 (+) True AMCG00011834
AMCG00011836 mRNA upstream 74899 5846142 ~ 5850008 (+) True AMCG00011836
AMCG00011851 mRNA downstream 15223 5951712 ~ 5973380 (+) True AMCG00011851
AMCG00011854 mRNA downstream 37608 5974097 ~ 5980285 (+) True AMCG00011854
AMCG00011850 mRNA downstream 45131 5981620 ~ 5982817 (+) True AMCG00011850
AMCG00011862 mRNA downstream 51288 5987777 ~ 5995655 (+) True AMCG00011862
AMCG00011864 mRNA downstream 67188 6003677 ~ 6013110 (+) True AMCG00011864
TU166896 other upstream 37015 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 37015 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 95375 5828801 ~ 5829532 (+) True G133059
TU166792 other upstream 163659 5759858 ~ 5761248 (+) True AMCG00011830
TU166232 other upstream 1981545 3941933 ~ 3943362 (+) False AMCG00011771
TU167105 other downstream 319461 6255950 ~ 6256682 (+) False AMCG00011876
TU167207 other downstream 547458 6483947 ~ 6489208 (+) True G133327
TU167225 other downstream 608899 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 1300452 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1568593 7505082 ~ 7508751 (+) True G133667

Expression Profile