RNA id: AMCG00011939


Basic Information

Item Value
RNA id AMCG00011939
length 1773
RNA type mRNA
GC content 0.67
exon number 6
gene id AMCG00011939
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6877975 ~ 6890954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGCCGCGCCGGGCTGGGAGGAGGGAGAGCTGGAGTTTAAACTGGTTTTCGAAGAGGAGCCGATGCTGCCCCGGGCCGTCTCCCCACCGCCCAGTCCCGGGGAGGGGGCGCAGAGAGCTGGGGAGGACAGGGGGAACGCCCGGCCGCACGACAGCCACAGCCCCGAAATCAGCCTGGATGCCACTCACCCCACCCGCCCCACCACTCATGCCAACCAACCAATTGGCATCCCGATGATCCAGCAGCCGTCCAATCACAGAGCAGGGATGCACTCCCCTCCCCCGAGGCGGGTCCTTGGGAAAGAATTCAGTGGCACCTTTGAAAGTCTGCCAGCTCGATCCGTACAGgtgccTGGCTCCCGAGTACTGGAGTGTCCGAGCATCCAGATCACAACCATCTCCCCCCAAGATGACTGTGAAGGGGTGGGCGGAGGACTGGGGGGGATTGGTGGAGGAGGCGGACTGGGCGGGGGCAGCTTCTGTTCTgagtgggggggaggaggaggaggaggaggctgggACAGGGAGCGTCTGTACCTCCCCCTGGACCCTTTCTCCTACCGGGATGGGGGAGGGTCGTCCCTGAGCCCTAGTCCCGCCAGCAGCCTGTCGTCCCGCAGCTGGGTGTCCGAGGAGGCGTCCAGCTGTGAGTCCCTGgccggggaggaggaggaactgAACGAAGCAACCTCTCGCTTCTGCCTGTCCCCCCTGTCCCCCctgtcccccctctcccccGTGTCCCCTCTGTCCCCGCTGTCTCCGctgtcccctctctcccccagctCCCGCCCCACCTCCCCAGGGGGCAAACGCCGACGCTCGGCCTACCTGGACGGTAACTACTGCTCCCCGCTGCCCTCCCCCTGCCCCTCCAGAAGGGGGAGCTGTTCGGAGGACGCACCGCCCCGTGCCCCGACCCCCTCCCCGTCCCCTCTCCTCGACCCCCTTCCCCATGCTGTCTCCCCCCTGCCGCCGCCAGCCCTCGACGACCCCCCGCACCAGAGATTCTCCTCCTCTtcgtcctcctcgtcctcctcctcttctgcctCCCCCggccccttctccctctccctcacatCTCTCGGAGTCGGACCTGGCGAACGCCTCCCCCAGAAAGCCAGGAAGACATCCCTGGAGCAGACAGCTTCCCGCGGAGAAGGGGACCCCGAGCCCGACCCCCCCGTCGCCGAGCACCCCTTGTCCAGGCGAGAGGGCACCCCGCTGGGCATGGACTACCTGTCAACTGCCCTGCCGCCGCTGGATTGGCCGCTGCCCTCGCAGTTCGACCAATACGAGCTGTGCATCGAGGTGCAGCCCCGCCCCCACCACCGCGCCCACTACGAGACTGAGGGCAGCCGGGGCGCGGTCAAGGCAACGCCAGGGGGGCATCCTGTCGTCAAGATGTTCGTGGGCACGGCGGACGAGCGGACCCTCCGGCCGCACCCCTTCTACCAGGTCCACCGCATCACGGGCAAGATGGTGGGCACTGCCAGCCAGGAGAGCCTGCAGGCTGGCACCAAGATACTGGATATCCCTCTGAGCCCGGAGAGCGGCATGAGTGccctggtggaCTGTGCTGGGATTCTGAAGTTGCGGAATTCAGACATCGAGCTGCGGAAGGGCGAGACGGACGTGGGCCGCAAGAACACGCGTGTGCGCCTGGTGTTCCGCACACACGTGCCGCTGGGCCCGGGCAGGGTGCTGTCACTGCAGACGTCCTCCCTGCCCATCGAGTGCTGTGAGTTACCCTGTGTGCGTCGGCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167498 lncRNA upstream 21202 6856181 ~ 6856773 (+) True G133534
TU167465 lncRNA upstream 96403 6780784 ~ 6781572 (+) True G133508
TU167439 lncRNA upstream 127055 6749659 ~ 6750920 (+) True G133491
TU167409 lncRNA upstream 143012 6734232 ~ 6734963 (+) True G133465
TU167379 lncRNA upstream 160052 6714358 ~ 6717923 (+) True G133440
TU167530 lncRNA downstream 3024 6893978 ~ 6895077 (+) True G133559
TU167549 lncRNA downstream 204600 7095554 ~ 7095927 (+) True G133577
TU167546 lncRNA downstream 221410 7112364 ~ 7113067 (+) True G133574
TU167555 lncRNA downstream 227343 7118297 ~ 7118850 (+) True G133583
TU167556 lncRNA downstream 227343 7118297 ~ 7118628 (+) False G133583
AMCG00011933 mRNA upstream 15306 6859874 ~ 6862669 (+) True AMCG00011933
AMCG00011938 mRNA upstream 54484 6821673 ~ 6823491 (+) True AMCG00011938
AMCG00011923 mRNA upstream 97209 6775705 ~ 6780766 (+) True AMCG00011923
AMCG00011932 mRNA upstream 171600 6701913 ~ 6706375 (+) True AMCG00011932
AMCG00011917 mRNA upstream 224244 6644876 ~ 6653731 (+) True AMCG00011917
AMCG00011954 mRNA downstream 202146 7093100 ~ 7094128 (+) True AMCG00011954
AMCG00011947 mRNA downstream 212362 7103316 ~ 7110756 (+) True AMCG00011947
AMCG00011946 mRNA downstream 232016 7122970 ~ 7129481 (+) True AMCG00011946
AMCG00011948 mRNA downstream 245417 7136371 ~ 7140132 (+) False AMCG00011948
AMCG00011955 mRNA downstream 280527 7171481 ~ 7176162 (+) True AMCG00011955
TU167225 other upstream 319490 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 388767 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 621293 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 990083 5887005 ~ 5887892 (+) False AMCG00011837
TU167596 other downstream 345987 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 614128 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 673854 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 674433 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 1069744 7960698 ~ 7970918 (+) False AMCG00011986

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_02433523_02469055.mRNA True 3089 mRNA 0.55 14 CI01000321 2433523 ~ 2469069 (+)