AMCG00011939


Basic Information

Item Value
gene id AMCG00011939
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6877975 ~ 6890954 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011939
ATGGGCGCCGCGCCGGGCTGGGAGGAGGGAGAGCTGGAGTTTAAACTGGTTTTCGAAGAGGAGCCGATGCTGCCCCGGGCCGTCTCCCCACCGCCCAGTCCCGGGGAGGGGGCGCAGAGAGCTGGGGAGGACAGGGGGAACGCCCGGCCGCACGACAGCCACAGCCCCGAAATCAGCCTGGATGCCACTCACCCCACCCGCCCCACCACTCATGCCAACCAACCAATTGGCATCCCGATGATCCAGCAGCCGTCCAATCACAGAGCAGGGATGCACTCCCCTCCCCCGAGGCGGGTCCTTGGGAAAGAATTCAGTGGCACCTTTGAAAGTCTGCCAGCTCGATCCGTACAGgtgccTGGCTCCCGAGTACTGGAGTGTCCGAGCATCCAGATCACAACCATCTCCCCCCAAGATGACTGTGAAGGGGTGGGCGGAGGACTGGGGGGGATTGGTGGAGGAGGCGGACTGGGCGGGGGCAGCTTCTGTTCTgagtgggggggaggaggaggaggaggaggctgggACAGGGAGCGTCTGTACCTCCCCCTGGACCCTTTCTCCTACCGGGATGGGGGAGGGTCGTCCCTGAGCCCTAGTCCCGCCAGCAGCCTGTCGTCCCGCAGCTGGGTGTCCGAGGAGGCGTCCAGCTGTGAGTCCCTGgccggggaggaggaggaactgAACGAAGCAACCTCTCGCTTCTGCCTGTCCCCCCTGTCCCCCctgtcccccctctcccccGTGTCCCCTCTGTCCCCGCTGTCTCCGctgtcccctctctcccccagctCCCGCCCCACCTCCCCAGGGGGCAAACGCCGACGCTCGGCCTACCTGGACGGTAACTACTGCTCCCCGCTGCCCTCCCCCTGCCCCTCCAGAAGGGGGAGCTGTTCGGAGGACGCACCGCCCCGTGCCCCGACCCCCTCCCCGTCCCCTCTCCTCGACCCCCTTCCCCATGCTGTCTCCCCCCTGCCGCCGCCAGCCCTCGACGACCCCCCGCACCAGAGATTCTCCTCCTCTtcgtcctcctcgtcctcctcctcttctgcctCCCCCggccccttctccctctccctcacatCTCTCGGAGTCGGACCTGGCGAACGCCTCCCCCAGAAAGCCAGGAAGACATCCCTGGAGCAGACAGCTTCCCGCGGAGAAGGGGACCCCGAGCCCGACCCCCCCGTCGCCGAGCACCCCTTGTCCAGGCGAGAGGGCACCCCGCTGGGCATGGACTACCTGTCAACTGCCCTGCCGCCGCTGGATTGGCCGCTGCCCTCGCAGTTCGACCAATACGAGCTGTGCATCGAGGTGCAGCCCCGCCCCCACCACCGCGCCCACTACGAGACTGAGGGCAGCCGGGGCGCGGTCAAGGCAACGCCAGGGGGGCATCCTGTCGTCAAGATGTTCGTGGGCACGGCGGACGAGCGGACCCTCCGGCCGCACCCCTTCTACCAGGTCCACCGCATCACGGGCAAGATGGTGGGCACTGCCAGCCAGGAGAGCCTGCAGGCTGGCACCAAGATACTGGATATCCCTCTGAGCCCGGAGAGCGGCATGAGTGccctggtggaCTGTGCTGGGATTCTGAAGTTGCGGAATTCAGACATCGAGCTGCGGAAGGGCGAGACGGACGTGGGCCGCAAGAACACGCGTGTGCGCCTGGTGTTCCGCACACACGTGCCGCTGGGCCCGGGCAGGGTGCTGTCACTGCAGACGTCCTCCCTGCCCATCGAGTGCTGTGAGTTACCCTGTGTGCGTCGGCACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011939 True 1773 mRNA 0.67 6 6877975 6890954

Neighbor

gene id symbol gene type direction distance location
AMCG00011933 NA coding upstream 15306 6859874 ~ 6862669 (+)
AMCG00011938 NA coding upstream 54484 6821673 ~ 6823491 (+)
AMCG00011923 NA coding upstream 97209 6775705 ~ 6780766 (+)
AMCG00011932 NA coding upstream 171600 6701913 ~ 6706375 (+)
AMCG00011922 NA coding upstream 237642 6639722 ~ 6640333 (+)
AMCG00011954 NA coding downstream 202146 7093100 ~ 7094128 (+)
AMCG00011947 NA coding downstream 212362 7103316 ~ 7110756 (+)
AMCG00011946 NA coding downstream 232016 7122970 ~ 7129481 (+)
AMCG00011955 NA coding downstream 280527 7171481 ~ 7176162 (+)
AMCG00011959 NA coding downstream 398093 7289047 ~ 7346943 (+)
G133534 NA non-coding upstream 21202 6856181 ~ 6856773 (+)
G133508 NA non-coding upstream 96403 6780784 ~ 6781572 (+)
G133491 NA non-coding upstream 127055 6749659 ~ 6750920 (+)
G133465 NA non-coding upstream 143012 6734232 ~ 6734963 (+)
G133440 NA non-coding upstream 160052 6676516 ~ 6717923 (+)
G133559 NA non-coding downstream 3024 6893978 ~ 6895077 (+)
G133577 NA non-coding downstream 204600 7095554 ~ 7095927 (+)
G133574 NA non-coding downstream 221410 7112364 ~ 7113067 (+)
G133583 NA non-coding downstream 227343 7118297 ~ 7118850 (+)
G133617 NA non-coding downstream 323281 7214235 ~ 7214462 (+)
AMCG00011917 NA other upstream 224244 6644876 ~ 6653731 (+)
AMCG00011909 ccnb1ip1 other upstream 317313 6545388 ~ 6560662 (+)
G133327 NA other upstream 388767 6483947 ~ 6489208 (+)
AMCG00011876 NA other upstream 617586 6255950 ~ 6260389 (+)
AMCG00011873 NA other upstream 775964 6084852 ~ 6102011 (+)
AMCG00011948 NA other downstream 244914 7135868 ~ 7140132 (+)
G133619 NA other downstream 345987 7236941 ~ 7242300 (+)
G133667 NA other downstream 614128 7505082 ~ 7508751 (+)
AMCG00011971 NA other downstream 668709 7559663 ~ 7575192 (+)
AMCG00011987 NA other downstream 1034182 7925136 ~ 7928238 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_02433523_02469055 NFATC1 coding CI01000321 null 2433523 ~ 2469069 (+)