RNA id: AMCG00012055


Basic Information

Item Value
RNA id AMCG00012055
length 4684
RNA type mRNA
GC content 0.50
exon number 16
gene id AMCG00012055
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9508741 ~ 9534241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCCAGGGccTGACAGGAGGGTGCTTAttTCCGGGGCCCGTTTCTCGCAGGAGCCCGCCGATCAGACGGTGGTGGCAGGGCAGAACgtcctcctctcctgtgtgGTCTTCAACTACTCGGGCATCGTCCAGTGGACCAAAGACGGCTTGGCGTTGGGCATCGGTGACGATCTCAGGGCCTGGCCGAGGTATCGAGTGGTGCGAAGTCCTGACTCTGGCCAGTATAACCTGGAAATCACCAGTGCCGAACTGTCCGATGATTCCCAGTACGAGTGTCAGGCCACAGAAGCGGCCCTGCGTTCCAGAAGAGCTAAACTCACTGTGCTGAttcCTCCAGCTGATCCGGTCATTGACGGGGGACCAGAGATATTGTTGACCGCAGGGGTAGCATACAATCTGACCTGTGAGGCCAAAGCAGCCAAGCCTGTGGCCGTAATTGAGTGGCAGAGAGATGGCGCCAAACAAGATGGCGCGATCAGCAGTACGGAAGTGCTGCCCGACAGGAAACGGGTAACAACTCGTAGCTTCCTGCCCATCCTGCCAACAGATGCCGATATCGGGCGACGCTACACCTGCCACACCCACAACGAGGCACTGCCCGCAGGCAAACAGGTCTCCGTCACTCTCAACGTGCACCATCCACCGACCGTGACCCTGTCCATTGAGCCTCGCTCCGtcctggagaaggagagagtgacGTTCACATGCTCAGCTACCGCCAACCCAGAGATCCAGGGATACAGATGGGCGAAGGGGGGGATTATTCTGGAGGGAGCCACAGACAGTGTCTACGAGACTATAGCAGACAGCAGCTTTTTCACTGAGCCCGTGTCCTGTGAGGTCTACAATGCGGTGGGCAGTACCAATGTCAGCATACTGGTGGATGTGCATTTCGGGCCAGTGATTGTCGTGGAGCCCCGACCGACCGCTGTGGACACCGGTTCGGATGTCACCCTCAACTGCAAATGGTCGGGGAACCCTCCCCTCACTCTGACGTGGACCAAAAAAGGATCCAACATGGTCCTCAGCAACAATAACCAGCTGTATCTGAAGTCAGTCAGCCAGGCAGACGCTGGGCAGTACGTCTGCAAAGCCATCGTCCCTCGCATAGGAGTGGGGGAGAAAGAAGTGACTCTCTCGGTCAACGGCCCACCCATCATCTCCAGTGATCTGGTCCAGTATGCTATCCGGGGGGACCGAGGCGAGGTCAAATGTTTCATTGGAAGCACCCCACCGCCTGACCGAATTGCTTGGGCATGGAAGGAGAAGGTCCTGGAGACGGGAACGTTGGAGCGCTACATGGTGGAGCGGGCCGACACGGGCAGCGGGGTCCTCTCCACCCTTACCATCAACAACGTCATCGAGGCGGACTTCCAGACGCGCTACAACTGCACGGCCTGGAATAGCTTCGGACCGGGAACGGCCATCATCCAACTGGAGGAGACAGAGATCGTTCCTGTGGGCATCATTGCTGGTGGTACCGTTGGATCCTCCATCCTTCTCTTCTTGTGTGTCATGGCTCTGGCACTCTTTCTCTATCGCCAGCGCAAAGGAAGTCGCAGAGGGGTGACTCTGGGTAAGCCAGACATCAAGGTGGAGACGGTCAACAAGGAGACACACAACTTGGAAGACGATGCTTCCAGTGTCTCGACGGCGACCCGCATGGTCAAAGCCATGTACTCCCCCTTCAAAGACGACATTGACCTCAAGCAGGACCTGCGGACTGACACACTGGACACTCGTGAGGAGTATGAGCTGAAGGACCCCACCAATGGCTACTACAATGTGAGGGCTGCCCACGAAGATACAAGGCCGTCCTCCCGGTCGATGCTATATGCCGACTATCGTACAACGGGGGGCCCCGGCACGAGCCCCGGGGGGCCGGTTACTGAGAACCGGGGAGGGGTAGCCGGAGCAGGGGGGCCCGCGACTACGGGCCGGGGCTGCTATGACCCCAGACCCCCTTCCCGGCTGTCCCACACCAGCTACGCTCAGTTCAACACCTATAACCGCCAGGCGGGGGCGCCCAACCCCAACCCGGTGCCCACCGCCGGCACCTCGGATTTCCCCTCCGACTGCGGGGGGACCATCCTGGACTCGGCCAGCCAGCTGTCCTATGAGAACTACGGAACGGGGCACGGGTACCCCCCAAGCACCGCCCCCACCTATGCCCCCTACAGGCTGGGGTTTGCCACCCAGGGCAACATGGGCAACCTGGAGAGGCTAGATCGACTGGGCAGCGGCTACGAAACCTATGCCCCCCCTCCAGTGGACAACACCATGGGCAAATATGGCACTGCCACCGCCCGCTTCTCCTACTCCTCCCAGCACTCTGATTTCGGCCAGAGGCACCAGCAACGCATGCAGACTCACGTGTGATGGGAATGGGGAGGCTGATTCAAATAGTATGAGAACAACAAGAttagagaaacaaaaagcaaacaaaaaatgaataaacagagAGGAACCCAGGTACCTAACCAAGAGACAAGTAGCTGTGATCATCGGGTTACATGTCCATAGAAATACGCCCCCCTCCCAACTCCTTTATACCCTTCTTGCCCCCCGCCATCCTAGAGTTCCCAGTGAGAGGGGGGTGTCGAAAGAAGTCAGATAATGCCATTCCAAGCGCTAAAGCTCGAGAGTGGATGCGCTACCCTTGTTTAGTGCTCTCCTCCAGAGCAGCCAGCACTGACACACTTTAAGCACGTATATCTGAGATGCCCAAAGAGTGGCTGGCGCAAACCCCACGACAGGAACCAGGTCATAAAAGCTGATCTGTGGACTTGCAGACTGATAAACGAAATGAGGGCGACcgcttttcttttccatattCAGGTCCGACTTCTCACCTTCCattagaattttattttatttttttaaattacaatttcatcgtaatttctttatttttatatttacgTTCCTGGCGTCTGTAACATCCAGGTGTATTTCCCAAATATCATCCCAGCTCCATTTTGCGGTTGGTGTTTTCATGGTTCGAGGCGCACGTGATTTGAAATCGATCAGCAAAGCACTGCAGAGCTTTCAGCGCTGAATCTAAACCGGGGTATACGAGGGACATACGCTGAAGAAGACAGAAGTCGAAACATTTGCTACCTGGCTACATTTCTTCCTGTTTTCATTTGacagtctgtttttttctgaagcCTATGTGGTAGATTAGGCCTAAGAACAGACACATTCTGCTTATAAGCATCCACAAACCCTTATGCCACTTTCTTTCCTCATAACTTGAAAACAGTCGTAACCCGAAGCAaattcttttactttttatgatTTCTCCCCACGTATTGTTTAGCTTTAATCAACGTACAAGAGCGATACAATCACATGAAACGGAATGAAGGATGAGTGGACTGATTGAATACAGTGCCTGTGAAAGGTGGTGGACTGATGCTGTTGGAGACCTGAGCCCTGTCTAGTTGtcttgtgtctttgtgtctttgaACCCTCATATATATGTCTGAGCCTCTAAACCCACAGGGGGAAAGGTTAGAAATCTATAATGTTGtccacagttttttgttttgtttgtttgattgattgtttttttagcaGTACCTGAAAGAGGTAGTTGCAACTGATGCCTGAGAAAAAACATTAGAAGCAACGTGCATTGGCCCAagtaatgtatttcattatgatCAGCTTTCCCTTCGattcttcatttaatttcctcttctGTTTGACTGCTGGTCCTGGGGGAGCTCTTTAGCCTGCAGGTTGCAGGTTCAAATCAAGGGTGCCACCAGCACACTGTGGTTTGGGGCTTCCAGAGGGTGAGAGTGTCTCACAATCTCTTTTCTTTTCGGCAAGTGCAGCAACCCAACtggtgtgcttgtttttctttgttggtGAAGGTGGAAACACTTTTCTGGGGCTGGATAATTGTctatatgtctgtctgtctgtctgtctgtctcatcTGTGTAATAAGGGCTATACAATCATGCATTGACAGTCAGTCCACACCTCTCCGttatttactgtaaatatgaataattggTAGAATAGCTGAATTtcccaagaaaaagaaaaagaaaacaaacaaaaaaaatgatattttttaaagtattctaTTGTTATTGTATAGTTTACGTGTGAGCACCTGCACATAGACATACACACTTGTAGAGCTATAGGCATTATAATTctcaaatgtaaattatacatacatacataggtatgtattcttttttttttttacacaatggGCTACAGCAATATTGGGCTACAATGGTTACAAGCGTCATTAGGAATGCATCTGCCAATAAGATAACCACAAGAttagtgtgtgttttacataaaataaagctgattgAGTGGAGATCAAATGTCTTTACACAGTAACTTGGGACGGTATGTATTTGTAGGCTCTAGTTAGTGGGGCTAGGATTTCTGAGGCAAATCTAAAATGGATGCTTcagctaatatatatatattttaacgaAAGCCTGAAATGGGAGACCCACTTGAAATCGGTCAGAATGTTCTTCTTAAACATTTTTCCTAAATGATTGGGACACAAGCGCTCTGGCATTGGGgacaaacttttattttttattggattgTATCCTGCCCATCTTACAATCATTGGTTTCTGACTTTGCTGTAGCTCTTCACCTGCACAATATAATAGgggatgtttatatatata

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168426 lncRNA upstream 93824 9401454 ~ 9414917 (+) True G134222
TU168335 lncRNA upstream 198810 9280885 ~ 9309931 (+) False AMCG00012043
TU168296 lncRNA upstream 312824 9194562 ~ 9195917 (+) True G134141
TU168230 lncRNA upstream 619795 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 705863 8802523 ~ 8802878 (+) True G134068
TU168454 lncRNA downstream 73 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 104 9534345 ~ 9538864 (+) False G134236
TU168499 lncRNA downstream 33039 9567280 ~ 9571718 (+) True G134259
TU168528 lncRNA downstream 111785 9646026 ~ 9646444 (+) True G134284
TU168540 lncRNA downstream 119611 9653852 ~ 9654600 (+) True G134292
AMCG00012052 mRNA upstream 68114 9438327 ~ 9440627 (+) True AMCG00012052
AMCG00012049 mRNA upstream 190105 9311422 ~ 9318636 (+) True AMCG00012049
AMCG00012048 mRNA upstream 200934 9305545 ~ 9307807 (+) True AMCG00012048
AMCG00012043 mRNA upstream 222535 9279988 ~ 9286206 (+) True AMCG00012043
AMCG00012047 mRNA upstream 235125 9272074 ~ 9273616 (+) True AMCG00012047
AMCG00012056 mRNA downstream 7773 9542014 ~ 9544985 (+) True AMCG00012056
AMCG00012067 mRNA downstream 101255 9635496 ~ 9643331 (+) True AMCG00012067
AMCG00012057 mRNA downstream 125508 9659749 ~ 9673361 (+) True AMCG00012057
AMCG00012069 mRNA downstream 177981 9712222 ~ 9719197 (+) True AMCG00012069
AMCG00012075 mRNA downstream 445649 9979890 ~ 9999729 (+) True AMCG00012075
TU168082 other upstream 945527 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 989715 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 1121644 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1453720 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1476132 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 117108 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 122116 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 318649 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 401685 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 499945 10034186 ~ 10034693 (+) True G134357

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000095_04032655_04048960.mRNA True 2361 mRNA 0.52 15 CI01000095 4032655 ~ 4049081 (+)