RNA id: TU92208


Basic Information

Item Value
RNA id TU92208
length 303
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G73832
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 37325022 ~ 37325324 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agatcctctccaagtcattaaggtttcgaggctgatgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcgcccaagatttgacggtacatggccccgtccatcgtccctttgatgcggtacAGTTGTCCTG

Function

GO:

id name namespace
GO:0009799 specification of symmetry biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92205 lncRNA upstream 25424 37299385 ~ 37299598 (+) True G73829
TU92204 lncRNA upstream 26894 37297677 ~ 37298128 (+) True G73828
TU92181 lncRNA upstream 81576 37243235 ~ 37243446 (+) True G73806
TU92177 lncRNA upstream 151846 37172931 ~ 37173176 (+) True G73802
TU92162 lncRNA upstream 161696 37160988 ~ 37163326 (+) True G73791
TU92214 lncRNA downstream 50951 37376275 ~ 37376615 (+) True G73838
TU92225 lncRNA downstream 186512 37511836 ~ 37512309 (+) True G73848
TU92229 lncRNA downstream 206292 37531616 ~ 37532213 (+) True G73852
TU92249 lncRNA downstream 273404 37598728 ~ 37602411 (+) True G73872
TU92250 lncRNA downstream 273433 37598757 ~ 37602411 (+) False G73872
AMCG00014853 mRNA upstream 294960 37000630 ~ 37030062 (+) True AMCG00014853
AMCG00014852 mRNA upstream 410519 36913400 ~ 36914503 (+) True AMCG00014852
AMCG00014850 mRNA upstream 591769 36617665 ~ 36733253 (+) True AMCG00014850
AMCG00014848 mRNA upstream 1027299 36295716 ~ 36297723 (+) True AMCG00014848
AMCG00014837 mRNA upstream 1773215 35551157 ~ 35551807 (+) True AMCG00014837
AMCG00014862 mRNA downstream 371336 37696660 ~ 37706352 (+) True AMCG00014862
AMCG00014864 mRNA downstream 428471 37753795 ~ 37754523 (+) True AMCG00014864
AMCG00014863 mRNA downstream 429535 37754859 ~ 37755848 (+) True AMCG00014863
AMCG00014870 mRNA downstream 576473 37901797 ~ 37904976 (+) True AMCG00014870
AMCG00014867 mRNA downstream 610267 37935591 ~ 37944752 (+) True AMCG00014867
TU91690 other upstream 1930373 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 2364575 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 2544432 34780122 ~ 34780590 (+) True G73329
TU91569 other upstream 3085622 34238934 ~ 34239400 (+) True G73292
TU91511 other upstream 3958922 33364755 ~ 33366100 (+) True G73244
TU92227 other downstream 192784 37518108 ~ 37518406 (+) True G73850
TU92541 other downstream 1107050 38432374 ~ 38432861 (+) True G74114
TU92678 other downstream 1485369 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 2010944 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 2281563 39606887 ~ 39621186 (+) True AMCG00014913

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU216225 True 2921 lncRNA 0.47 2 NC_053126.1 31304341 ~ 31307307 (-)
mexican tetra (Astyanax mexicanus) TU216225 True 220 lncRNA 0.49 1 NC_035914.1 19120745 ~ 19120964 (-)