RNA id: TU126436


Basic Information

Item Value
RNA id TU126436
length 1300
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G101242
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26251123 ~ 26253246 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAAGTCAAagttcttttatttaaaaaacaaaacacctacGATTACATGCCATGTTTGGTGAACTGGCTTTTTCAAAACAGCTCGAGATTGTAAAggtgtttatttgtgtacagCTTTAATTCAGTTGAGAGTGGCACAAAATGATCCCTTGTTCATGACCCAAAGGATGGAATTTCCACAACTGCCTTTCCCTGAACACCTCTGTATGATCTGTACCATCACATTAGCTCATTATTATCCTTTCGCTGGTACAATATAAAAAGCACTTTGAATCAAGGCCATCGACAACAGGATTATTCCTCCCTGACCAGGTGTATATAACAGGAACTCGGCTGCCATCAAGACagcttttttcaaatgcatatcCTGCTAATGCATAAAATTGTGTCTATTGTCTTAGATTAAGAAATCGAATGACACACTTTTCAGTCACTTGAATGGAAGTTCTAGCTGCACTGTAGAAAGGAGATTAGCTACGCCCCTGTCCTGTACAAAATCGTTAGAAAGATGATGGGATATAAAACAGAGAACGTATAAGAATGATGtgctacaaaatacattcagaaaaggTTCTCAAATGTCTCCCAATACAAAGGCCAGTGGCACGACTGAAAAAGCAGAAAGATATAAACATCACAAACACGTCAATTATAAACGGAAACGCAGTCCTGCTGAAAACTGCATAACACTCCAGGTGTCAACAGACTCTTCGGTCTTATCTTCATTGCACCTTGACCATCACTATTAACCagctacaattaaaaaaatgcttaaaaacagaACCCTAAAGCTTAATGGACCCAGTCAGCTTCCCTTTcttaatcttgttttaattcatCATCAGTGGGAAAAGTACAGTTCCTTGGTCAACATGGAAACGATGGAAGGGATCTGCTTCTTCGCATCATAGCCGGGGATGTTGGAGGCCGACTCGAATTCCAGTGCCACCTTGTGGTTGACCCTCGTCAGGATGTGCATGAGCTCCAGCTCCTTGTGGTACTTCTCCAGCATCTCCACCAGGGACTGAATGAACCAGGAGCCGTTCATTGTGTTTCTCCAGGAGTAGTAACCTTTAATGACAAACAGGGCAGAAACTCTCAAGAACAAACCTTGGCAGAGGTATAATGAGCCCTCCCTCATGTAAACAGATTATCTTTGCTTTTCTGCTGTAGTAACGGATTGCTTACCTGGGGCTGTAGAGTACGCGTACAAGAAGTCCGCCTCCACTGGGATCCTCTCCGTTGAGCCAGCGTCTGAACTGTCGGCCTCAATCCCTGCATCCAGTCCAGTGCCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126360 lncRNA downstream 205781 25995843 ~ 26045342 (-) True G101181
TU126272 lncRNA downstream 676202 25574403 ~ 25574921 (-) True G101115
TU126255 lncRNA downstream 848626 25399982 ~ 25402497 (-) True G101103
TU126186 lncRNA downstream 1506767 24744082 ~ 24744356 (-) True G101045
TU126181 lncRNA downstream 1621340 24629564 ~ 24629783 (-) True G101040
TU126443 lncRNA upstream 10830 26264076 ~ 26264315 (-) True G101249
TU126523 lncRNA upstream 270413 26523659 ~ 26525730 (-) True G101309
TU126538 lncRNA upstream 320820 26574066 ~ 26574287 (-) True G101317
TU126539 lncRNA upstream 321139 26574385 ~ 26575210 (-) True G101318
TU126594 lncRNA upstream 514961 26768207 ~ 26770268 (-) True G101369
AMCG00015865 mRNA downstream 10398 26240273 ~ 26240725 (-) True AMCG00015865
AMCG00015864 mRNA downstream 10987 26235005 ~ 26240136 (-) True AMCG00015864
AMCG00015863 mRNA downstream 74186 26173669 ~ 26176937 (-) True AMCG00015863
AMCG00015857 mRNA downstream 117267 26131082 ~ 26133856 (-) True AMCG00015857
AMCG00015861 mRNA downstream 133421 26062313 ~ 26117702 (-) True AMCG00015861
AMCG00015871 mRNA upstream 114478 26367724 ~ 26385388 (-) True AMCG00015871
AMCG00015874 mRNA upstream 220608 26473854 ~ 26474183 (-) True AMCG00015874
AMCG00015879 mRNA upstream 223478 26476724 ~ 26494504 (-) True AMCG00015879
AMCG00015880 mRNA upstream 242118 26495364 ~ 26519876 (-) True AMCG00015880
AMCG00015881 mRNA upstream 311075 26564321 ~ 26569444 (-) True AMCG00015881
TU126211 other downstream 1250233 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 5971479 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 6275054 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 7620458 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 8413181 17837580 ~ 17837942 (-) True G99939
TU126708 other upstream 1908591 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 2850983 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 3912780 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 4387948 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 4466575 30719821 ~ 30724429 (-) False G101853

Expression Profile