RNA id: TCONS_00009382


Basic Information

Item Value
RNA id TCONS_00009382
length 4572
RNA type mRNA
GC content 0.44
exon number 15
gene id XLOC_004737
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25640480 ~ 25770232 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAATTGGATTGTTTACGTATGCTTCCCATTACGTGGAAAGACGGACCGTAAACAAAAACAGGAGCCTCTGGCTTTGCATATCGCGTTTTTGCATCCTATTTGATTGTTCTGCTCAAATGAGAGAATCACGTTGATCCGTCTAGTGGTTTGGGGGATTAAATCATCACCGCATCCATCTATACATGCATGTATACTGATGACGTGATGACATCTACGGGTATAGCGACCCCCTGAATCAAAACCTGCTTTTGAAGCCGTCTGTTTTCTCAAAGAAGCCAGCTGCATCTCGACTGAGCGTCATCATGGTGGTTTTTAATGGAGTGTTGAAGATCAAGGTTTGTGAAGCTCTGGATCTGAAACCCACCGCATGGTCTCTCCGGCACGCTGTGGGTCCGAAGACCCAGACCTTCCTCCTGGACACGTATATCGCCCTCAATGTGGATGATTCCCGAGTGGGACAAACTTCTACCAAGCAGAAGACTAACAGTCCGGCTTGGAATGATGAGTTCGTAACAGAGGTTTATGATGGGAAGAAAATCGAACTTTCTGTCTTTCACGATGCACCCATCGGTTATGATGACTTTGTGGCCAACTGCACTATACAGTTTGAAGACCTGCTGCAGAATGGTAGTAGGCACTTTGAAGATTGGATTGACCTGGAGCCTGAGGGTAAGGTGTACGTCATCATCGATCTGTCAGGATCCTCCTGCGAAGCAGCAGCATCATCCAATGAAAATGAGGAGAGGGTGTTTCGTGAGCGGATGCGTCCCCGAAAGCGCCAGGGGGCCGTCAGGAGGAGAGTCCATCAGGTCAACGGGCACAAGTTCATGGCCACCTACCTGAGACAACCTACCTACTGCTCCCACTGCAGAGATTTCATCTGGGGTGTGTTGGGGAAACAGGGGTATCAGTGTCAGGTTTGTACCTGTGTGGTCCATAAGAGATGCCATGAACtcataataacaaaatgtgctggCATGAAGAAACAAGAAGACACTCCTGAAGAGGTCGGCTCTCAGCGCTTCAGTGTAAACATTCCACACATGTTCAGCATTCACAATTACAAAGTCCCAACCTTCTGCGACCACTGCGGCTCTTTACTATGGGGTCTGATGAGGCAAGGCCTGCAGTGCAAAGCCTGTAAAATGAATGTCCATCGGCGTTGTGAAAGTAATGTAGCTCCTAGCTGTGGTGTCGATGCCCGAAAAATCGCTAAAGTGCTTTCTGATCTCGGGGTGACGCCAGATAAAATCTCCAACAGTACCCAACGCAGGAAAAAGTTGACTCCAGGGCAGGACCCTCAGCAATCCACAACAGAAGCCCCTTCATCAGAAGAGTCTGACCGGTGCAAATCAGCTCCAACCTCACCTTGCGACCAGGCAGAGCTTGCAGAACTGGAGAGTATCCGTAAGGCCCTTTCTTTCGGTCAGGAGCACAagtcttcctcctcttcctcgtGCAGTGGTGTTCAGAGCACAGAAATTGAGGGCCGGGAGAATGGAGACCTAAAAACCGTCCAGACTAAGAGGATGAGCCTCACTGACTTCTCATTCATCAAAGTGTTGGGCAAAGGCAGCTTCGGGAAGGTGATGCTGGCTGAGTTGAAAGGCACAGATGAAGTTTACGCTGTGAAAGTTTTGAAGAAAGATGTCATCCTTCAAGACGATGATGTTGACTGCACTTTGACTGAGAAACGCATTCTGGCCCTGGCTAGAAAGCATCCCTATCTAACCCAACTTTTCTGCTGCTTCCAGACAAAGGATCGCTTGTTCTTTGTTATGGAGTATGTGAACGGAGGAGACCTGATGTTTCAGATCCAGCGCTCACGGAAGTTCGATGAAGCTCGCTCTCGTTTTTATGCAGCTGAGGTCACTTCAGCACTGATGTTTCTGCATCAGCACGGCGTCATATACAGAGATCTAAAGCTAGATAACATTCTGTTGGATGCTGAAGGACATTGTAAACTGGCCGACTTTGGCATGTGCAAGGAGGGTATTTTGAACGGGGTCACGACCACCACCTTCTGCGGGACACCGGATTACATCGCTCCTGAGATCCTGCAGGAGTTGGAGTACGGCCCATCAGTGGACTGGTGGGCTCTGGGTGTTCTGATGTACGAGATGATGGCCGGTCAGCCTCCGTTTGAAGCCGACAATGAGGATGATCTGTTCGAGTCCATCCTCCACGATGACGTCCTTTATCCCGTGTGGCTGAGTAAAGAAGCTGTCAGCATCCTGAAAGCTTTCATGACGAAGAATCCCAGTAAGCGTCTGGGCTGTGTAGTGACCCAGGGGCTGGAAGAGGCCATTAAAGTCCACCCATTCTTCAGAGAGATCGACTGGGTCCAGCTGGAACAGAGGAGGATCAAGCCCCCCTTTAAACCTCGCATTAAAACCAAGCGCGACGTGAATAACTTCGACCAGGACTTCACTCGCGAGGATCCTGTTCTCACACCAGTAGACGACGCCATCATCAAACAGATCAACCAGGAGGAATTCAAGGGCTTCTCGTACTTCGGAGAGGAGGCTTTGTCTTAAACCCCAACCTAGAATCTATCAGCTCAAATATATATCAAACACACCCACAAAAAAACACTTGATGCATCGCAATACATGAATACACTCTCCTCGGACCAGACCAGATCAGAAAGCCAGTCCCTTGTGATTCAGTTTTCTTTTACTGCTGTTTTTAGTCGTTTAGTCTTCTTtacatctcaaaaaaaaaataaataaataatggatttCATCCCAGGCCTCAACAACCAATCAGAAACAAAACGAATGTTCTACAGAGCCCAAGAAAGAAGGGTCGGAACGCGCTACCTTAAACCAAAATTTGACGATACCAATGATTGTACCATTTCGGATACTTTTAAATGAAAGGTTGTGTGCCCTTGAGGAAGAATCGACCCTGCATACGTGACAATAAGACATGTGCTGTGCATTCAAATGCCTTCTTGTGTATTCAGGTGACATTTCGGGAGCAATTTTATAAGATAAACAGAGACatttgtagtatatatatatatatatatatatatatatatatatatatatatatataaatatatatatataaatatattccaTCACAGTGTTATGAGAGTTCATTAGGAATGGTAACCTGCTGTATATGGGTTGTGTCGGCCtgagtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtttgcatGAATGAGAGCGAGAGGCCCTTGCCCTCCTGAAGCTCTACGGTTGTTTTCATGTTGTTTCGCAACGGCTTTTCATTTGCGCTCGAGTGTGTaacgtgcgtgtgtgtttttgccGTGTGCCGCCGCTATGCACAAAAAAGGTGTAGCTGTGGCGAGGAAAGACAAGCACTTGTTGCTGTCAGGTCATTTTGTACAGAACATGTACATAGTATTCGCTCCAAAAAGCCTGTGAACGCTTCTTAGGGTAGGCAATTGTTTGCATGGTCTTGCGAAACGTGTCGTTATTGAGTAGCATCAGTTTACGGAAagattttatgattattttttttatatatatctatgTGCAATACCCTGAACACATTTCTCCccctcatattattattattattattattatgattatttccttctattttgtgtgtgttttataggtTAGAGCTTCACCAAAGGCTTTCTCGCTCTCGGTTTCATGCTCCTCTCTGCCGTTCTCGTGTATATAGTTTGCTGAAAGTACATAAGCTGTGGAATGTAGTGGAAAACATGCGTGAGCTTTTAATTTATTCGATATACATGTAGCTACGCTTCCCTTTTTTTGTGTCAACGCGTCTTCTTGTGTTACTTTATTTCAGCCTTCTCTTTTGTGAACCCCCTTGTAGTTGAATTATTGACTCGTGCAATGTGAAAGACTTTAAAGGACGAGGTGGACTAAACAAAAAGGGTACATTTCAGGCGTACTAATTAAAACCTTCTGGAATGTGATGACTTTTGCTTTAGCGATTTGaggatttctttttgtcttactttttttttttctctctccaagTTGTTCCActgctttttctttttaaaccgTGTCTGTGGGTTGATCATGGTAGCTAGGTCAATGATCTTCTTTGAAGCCTTTTCTCTCGCAGGCACCTTCCTGTCTGTCGCCCTCACTGTATTATGCCAAACGTCTCGTTCAGCTTTATTTTCTCCGtcgtttcctcttttttttttaactgtaaaggAATGAACTTGATATATACTGTAGGACGCATCCATGGTCTGTCTTCAAAGTCAAAACAGAGTAAATAAACTAAGAATTACCTCTTAAATGAAGTGCAAAGATTTCTCTTGCTGAATATTGAATATTTGCGCATacagtattaaaatacataaatgtttCATATGTATGATAGTGCTGTATTATATACATCTGGTATTGGACTTTAGTTTCTGTGTGGTGAAGCTTCATGTGCACAGAGGTATTTCTTTTTTCTGGATACACTAAGCGTTATCTCATTGTAAGCATTTTACTATGTGCCAAATGTACTGTCATCTACAGGATGTGAATGTTTTGTTTAACCTATTAAACCCTAAGATGTATGAAAAAT

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function
GO:0004698 calcium-dependent protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8191 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Is expressed in brain; peripheral neurons; and spinal cord. Orthologous to human PRKCE (protein kinase C epsilon).

Ensembl:

ensembl_id ENSDART00000105608

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010742 lncRNA upstream 136100 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 167274 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010939 lncRNA upstream 231960 25380168 ~ 25408520 (+) False XLOC_004733
TCONS_00010741 lncRNA upstream 250889 25382277 ~ 25389591 (+) True XLOC_004733
TCONS_00010740 lncRNA upstream 252810 25380137 ~ 25387670 (+) False XLOC_004733
TCONS_00010940 lncRNA downstream 719121 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010942 lncRNA downstream 819412 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA downstream 819412 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010943 lncRNA downstream 867895 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA downstream 921587 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00009381 mRNA upstream 37139 25600685 ~ 25603341 (+) True XLOC_004736
TCONS_00009379 mRNA upstream 153236 25467560 ~ 25487244 (+) False XLOC_004734
TCONS_00009378 mRNA upstream 155171 25432627 ~ 25485309 (+) False XLOC_004734
TCONS_00009375 mRNA upstream 355970 25223873 ~ 25284510 (+) True XLOC_004732
TCONS_00009374 mRNA upstream 373349 25223873 ~ 25267131 (+) False XLOC_004732
TCONS_00009384 mRNA downstream 5502 25775734 ~ 25830268 (+) False XLOC_004739
TCONS_00009385 mRNA downstream 5582 25775814 ~ 25829018 (+) True XLOC_004739
TCONS_00009386 mRNA downstream 75262 25845494 ~ 25881944 (+) True XLOC_004740
TCONS_00009387 mRNA downstream 175328 25945560 ~ 25948479 (+) True XLOC_004741
TCONS_00009388 mRNA downstream 664246 26434478 ~ 26437252 (+) False XLOC_004742
TCONS_00009380 other upstream 162574 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 388693 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 1074888 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 1222140 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009355 other upstream 1294987 24342331 ~ 24345493 (+) False XLOC_004722
TCONS_00009419 other downstream 1364637 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 1386711 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 1448761 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 1461063 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 3175300 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_05490285_05556254.mRNA True 2905 mRNA 0.52 19 CI01000063 5490285 ~ 5556462 (+)
bowfin (Amia calva) AMCG00013365 True 1788 mRNA 0.57 16 CM030125.1 29586251 ~ 29627558 (+)