RNA id: AMCG00019762


Basic Information

Item Value
RNA id AMCG00019762
length 609
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00019762
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43299078 ~ 43302976 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTTCAGCTGTGGCATGCTGTTCCTGGCCTGCATCAGTGTGGACCGCTACTGGGCTGTGACGACCGGCAGAGTCAAGAAGGACCGCTGCCTCCTCATCTGCCTGCTGGTGTGGACAACAGCCTTTATCCTGGGCATGCCCAAACTGGTGTTTTCCACTGTGAGAGAGATACCCGGGCGGAAGGTGTGCCTGTCTGTCTACCCCTCCCACATGGCCCAGGCAGCCAAGGCCTCACTGAAGATCTTGGAGGTGCTGCTCAGCTTCGCCCTGCCTTTCTTGGTTATGCTCTTCTGCTACTCCAGGGTGGCACAGGTCCTGTCTCGGAGCCCccaggtgaagaagtggaaagCCTTCAAGGTGTTGATGGCCGTGGTGGGCGTTTTCATTGTCACCCAGCTGCCCTACAACATTGTGAAGTTCTGCCGGGCCATGGATGTCATCTACACCCTGGTCACTGACTGCGAAGCCAGCAAGCACATGGACAAGGCCACCCAGGTCACAGAGAGTTTGGCCCTTGCCCATAGCTGCCTCAACCCCATTGTGTACGCCTTCGTTGGAGCCTCCTTCAAGCACCACATCCTCAATGCCCTGTGGGTCACAATGTAA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46161 lncRNA upstream 66432 43232356 ~ 43232646 (+) True G36936
TU46129 lncRNA upstream 348656 42950206 ~ 42950422 (+) True G36910
TU46114 lncRNA upstream 430444 42868402 ~ 42868634 (+) True G36895
TU46031 lncRNA upstream 673260 42625225 ~ 42625818 (+) False AMCG00019751
TU46022 lncRNA upstream 696056 42602809 ~ 42603022 (+) True G36845
TU46232 lncRNA downstream 156470 43459446 ~ 43550548 (+) True G37000
TU46233 lncRNA downstream 198076 43501052 ~ 43550548 (+) False G37000
TU46252 lncRNA downstream 273272 43576248 ~ 43577257 (+) True G37011
TU46314 lncRNA downstream 611216 43914192 ~ 43914819 (+) False G37068
TU46315 lncRNA downstream 611216 43914192 ~ 43914819 (+) False G37068
AMCG00019758 mRNA upstream 27886 43261944 ~ 43271192 (+) True AMCG00019758
AMCG00019755 mRNA upstream 336579 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019753 mRNA upstream 558739 42717933 ~ 42740339 (+) True AMCG00019753
AMCG00019750 mRNA upstream 636585 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019751 mRNA upstream 671973 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019759 mRNA downstream 60025 43363001 ~ 43368277 (+) True AMCG00019759
AMCG00019764 mRNA downstream 224471 43527447 ~ 43552305 (+) True AMCG00019764
AMCG00019766 mRNA downstream 262110 43565086 ~ 43566039 (+) True AMCG00019766
AMCG00019767 mRNA downstream 399567 43702543 ~ 43705085 (+) True AMCG00019767
AMCG00019770 mRNA downstream 646059 43949035 ~ 43964268 (+) True AMCG00019770
TU46165 other upstream 28193 43261894 ~ 43270885 (+) False AMCG00019758
TU46131 other upstream 336420 42960656 ~ 42962658 (+) True AMCG00019755
TU46002 other upstream 740142 42556540 ~ 42558936 (+) True AMCG00019747
TU45249 other upstream 5783051 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6999531 36292346 ~ 36299547 (+) True AMCG00019671
TU46181 other downstream 27316 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 750098 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 1976479 45279455 ~ 45339619 (+) False G37372
TU46904 other downstream 3488051 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 5147652 48450628 ~ 48451167 (+) True G37779

Expression Profile