RNA id: AMCG00019766



Basic Information


Item Value
RNA id AMCG00019766
length 954
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00019766
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43565086 ~ 43566039 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCTTAAAATACCAGACAAGGGCAAAACAAAGCTGTTCAATTTCACTGCGCCAAAACGGACACGGGATTGCGCTGCAGCCAAACCTCATGGATATCCAACAGCGTGACTCGGACCCGGGCTCCGTGGTCGGGCCGCTCAATGGGGATGGCCCCGTTACCCAGGGGGGCGGAGATGCTCCCTCCGACCTCGCCAGAAAACTCGACGGCGCCTTTGCGCACTTGGACCCGAAAGAGGTCTTCCTGAAAGACCGCAGGAGGGCCAGATCTCTCCCCGCGTACCCGGACCAGGCCAGCCTGTTCAGCGAGATTTCCCAGAGCTGCAGGAAGAGGGTCCAGTTCGCCGACGCGCTGGGCTTCAGCCTGGCCAGCGTCCGGCACTTCAGCGCCGCGGAGGAGCCGCACATCCCGTCCAACGTCTTCTCCAGGCTGCAGAGCTTCCCCCCCGGGCAGGACAGGGAGCTCTTGGGGGACCTCTGCGACCAGTTCAAGGTCAGCCTGACTCTAAACTGTCTGGTGCCCACTTTCAAACAGCCCGTGGACGTCGAGAGCAAAGTGTCGCGCCTCAAAGTGTCCCTGGAGAGCGTCACGGTTACGCACTTGGACATCCGAGGGCTCGCCAGGGTGCTGAAACTCGGGTGCAGGAGAGAGGTGGGGGTCAGGTACACCTTCAACGACTGGTTGTCGTTTGTTGACGCACAAGCGGTCCCTGTGCCAGCTGAAGACaaaactactattactactacagGCACCGCTGCTGCCAGTGCGCAGGACGAGCAGTTTGCGTTCACCATGTACACCCCTCCGCTGCTGGACCCCCGCCCCTCTGTGCACTTTGCTGTCTACTACAAAACGGACATTGGGGAGTTCTGGGACAATAACGACGGGCACAACTACACCCTGAGGTCGCAGTGCACGGCCCCGTACCAGACCGCTGCCTTTGACGCCACCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46232 lncRNA upstream 14538 43459446 ~ 43550548 (+) True G37000
TU46233 lncRNA upstream 14538 43501052 ~ 43550548 (+) False G37000
TU46161 lncRNA upstream 332440 43232356 ~ 43232646 (+) True G36936
TU46129 lncRNA upstream 614664 42950206 ~ 42950422 (+) True G36910
TU46114 lncRNA upstream 696452 42868402 ~ 42868634 (+) True G36895
TU46252 lncRNA downstream 10209 43576248 ~ 43577257 (+) True G37011
TU46314 lncRNA downstream 348153 43914192 ~ 43914819 (+) False G37068
TU46315 lncRNA downstream 348153 43914192 ~ 43914819 (+) False G37068
TU46316 lncRNA downstream 348153 43914192 ~ 43914819 (+) True G37068
TU46318 lncRNA downstream 368064 43934103 ~ 43934319 (+) True G37070
AMCG00019764 mRNA upstream 12781 43527447 ~ 43552305 (+) True AMCG00019764
AMCG00019759 mRNA upstream 196809 43363001 ~ 43368277 (+) True AMCG00019759
AMCG00019762 mRNA upstream 262110 43299078 ~ 43302976 (+) True AMCG00019762
AMCG00019758 mRNA upstream 293894 43261944 ~ 43271192 (+) True AMCG00019758
AMCG00019755 mRNA upstream 602587 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019767 mRNA downstream 136504 43702543 ~ 43705085 (+) True AMCG00019767
AMCG00019770 mRNA downstream 382996 43949035 ~ 43964268 (+) True AMCG00019770
AMCG00019773 mRNA downstream 448471 44014510 ~ 44044675 (+) True AMCG00019773
AMCG00019775 mRNA downstream 494486 44060525 ~ 44070657 (+) True AMCG00019775
AMCG00019784 mRNA downstream 700202 44266241 ~ 44269213 (+) True AMCG00019784
TU46181 other upstream 231773 43330292 ~ 43333313 (+) True G36954
TU46165 other upstream 294201 43261894 ~ 43270885 (+) False AMCG00019758
TU46131 other upstream 602428 42960656 ~ 42962658 (+) True AMCG00019755
TU46002 other upstream 1006150 42556540 ~ 42558936 (+) True AMCG00019747
TU45249 other upstream 6049059 37513987 ~ 37516027 (+) True G36212
TU46357 other downstream 487035 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 1713416 45279455 ~ 45339619 (+) False G37372
TU46904 other downstream 3224988 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 4884589 48450628 ~ 48451167 (+) True G37779
TU47362 other downstream 5992443 49558482 ~ 49561383 (+) True G37962

Expression Profile